Experiment: medium light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS15320 and SGL_RS15325 are separated by 142 nucleotides SGL_RS15325 and SGL_RS15330 are separated by 245 nucleotides SGL_RS15330 and SGL_RS15335 are separated by 2 nucleotides
SGL_RS15320: SGL_RS15320 - DEAD/DEAH box helicase, at 2,887,644 to 2,889,122
_RS15320
SGL_RS15325: SGL_RS15325 - N-acetyl-gamma-glutamyl-phosphate reductase, at 2,889,265 to 2,890,320
_RS15325
SGL_RS15330: SGL_RS15330 - imidazole glycerol phosphate synthase subunit HisH, at 2,890,566 to 2,891,198
_RS15330
SGL_RS15335: SGL_RS15335 - threonine--tRNA ligase, at 2,891,201 to 2,893,012
_RS15335
Position (kb)
2889
2890
2891 Strain fitness (log2 ratio)
-1
0
1
2
3
4
5 at 2888.266 kb on + strand, within SGL_RS15320 at 2888.276 kb on + strand, within SGL_RS15320 at 2888.599 kb on + strand, within SGL_RS15320 at 2888.682 kb on + strand, within SGL_RS15320 at 2888.706 kb on + strand, within SGL_RS15320 at 2888.831 kb on - strand, within SGL_RS15320 at 2888.897 kb on - strand, within SGL_RS15320 at 2889.062 kb on + strand at 2889.203 kb on - strand at 2889.389 kb on - strand, within SGL_RS15325 at 2889.616 kb on + strand, within SGL_RS15325 at 2890.085 kb on + strand, within SGL_RS15325 at 2890.119 kb on - strand, within SGL_RS15325 at 2890.469 kb on + strand at 2890.542 kb on + strand at 2890.550 kb on - strand at 2890.689 kb on - strand, within SGL_RS15330
Per-strain Table
Position Strand Gene LocusTag Fraction medium light; bubbling remove 2,888,266 + SGL_RS15320 0.42 +1.6 2,888,276 + SGL_RS15320 0.43 +1.8 2,888,599 + SGL_RS15320 0.65 +2.4 2,888,682 + SGL_RS15320 0.70 +4.8 2,888,706 + SGL_RS15320 0.72 +0.5 2,888,831 - SGL_RS15320 0.80 +1.3 2,888,897 - SGL_RS15320 0.85 +1.9 2,889,062 + +0.7 2,889,203 - +0.7 2,889,389 - SGL_RS15325 0.12 +0.7 2,889,616 + SGL_RS15325 0.33 +0.1 2,890,085 + SGL_RS15325 0.78 +0.7 2,890,119 - SGL_RS15325 0.81 +1.1 2,890,469 + +0.1 2,890,542 + -0.3 2,890,550 - +2.7 2,890,689 - SGL_RS15330 0.19 -0.3
Or see this region's nucleotide sequence