Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14490

Experiment: medium light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14485 and SGL_RS14490 are separated by 147 nucleotidesSGL_RS14490 and SGL_RS14495 are separated by 749 nucleotides SGL_RS14485: SGL_RS14485 - transcription-repair coupling factor, at 2,701,931 to 2,705,530 _RS14485 SGL_RS14490: SGL_RS14490 - hypothetical protein, at 2,705,678 to 2,705,983 _RS14490 SGL_RS14495: SGL_RS14495 - septal ring lytic transglycosylase RlpA family protein, at 2,706,733 to 2,707,698 _RS14495 Position (kb) 2705 2706Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8 9 10at 2704.819 kb on - strand, within SGL_RS14485at 2704.887 kb on + strand, within SGL_RS14485at 2704.889 kb on + strand, within SGL_RS14485at 2704.909 kb on + strand, within SGL_RS14485at 2704.956 kb on - strand, within SGL_RS14485at 2705.067 kb on + strand, within SGL_RS14485at 2705.067 kb on + strand, within SGL_RS14485at 2705.075 kb on - strand, within SGL_RS14485at 2705.085 kb on - strand, within SGL_RS14485at 2705.145 kb on + strand, within SGL_RS14485at 2705.169 kb on - strand, within SGL_RS14485at 2705.225 kb on - strandat 2705.301 kb on - strandat 2705.385 kb on - strandat 2705.423 kb on + strandat 2705.423 kb on + strandat 2705.431 kb on - strandat 2705.436 kb on - strandat 2705.514 kb on + strandat 2705.514 kb on + strandat 2705.514 kb on + strandat 2705.522 kb on - strandat 2705.522 kb on - strandat 2705.522 kb on - strandat 2705.522 kb on - strandat 2705.522 kb on - strandat 2705.780 kb on + strand, within SGL_RS14490at 2705.788 kb on - strand, within SGL_RS14490at 2705.897 kb on - strand, within SGL_RS14490at 2705.977 kb on + strandat 2706.088 kb on + strandat 2706.189 kb on - strandat 2706.639 kb on - strandat 2706.641 kb on + strandat 2706.649 kb on - strandat 2706.649 kb on - strandat 2706.903 kb on - strand, within SGL_RS14495

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Per-strain Table

Position Strand Gene LocusTag Fraction medium light; bubbling
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2,704,819 - SGL_RS14485 0.80 +9.7
2,704,887 + SGL_RS14485 0.82 +9.4
2,704,889 + SGL_RS14485 0.82 +10.0
2,704,909 + SGL_RS14485 0.83 +9.3
2,704,956 - SGL_RS14485 0.84 +10.2
2,705,067 + SGL_RS14485 0.87 +9.8
2,705,067 + SGL_RS14485 0.87 +9.8
2,705,075 - SGL_RS14485 0.87 +10.2
2,705,085 - SGL_RS14485 0.88 +9.7
2,705,145 + SGL_RS14485 0.89 +9.9
2,705,169 - SGL_RS14485 0.90 +10.0
2,705,225 - +8.8
2,705,301 - +10.0
2,705,385 - +9.4
2,705,423 + +2.4
2,705,423 + +1.5
2,705,431 - +3.5
2,705,436 - +5.3
2,705,514 + -0.9
2,705,514 + +0.6
2,705,514 + -0.5
2,705,522 - -0.2
2,705,522 - -0.9
2,705,522 - +1.9
2,705,522 - +0.1
2,705,522 - -1.9
2,705,780 + SGL_RS14490 0.33 +1.3
2,705,788 - SGL_RS14490 0.36 +0.2
2,705,897 - SGL_RS14490 0.72 +1.2
2,705,977 + -0.3
2,706,088 + +1.0
2,706,189 - +0.5
2,706,639 - +6.9
2,706,641 + +5.8
2,706,649 - +7.3
2,706,649 - +7.0
2,706,903 - SGL_RS14495 0.18 +5.4

Or see this region's nucleotide sequence