Experiment: medium light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS14485 and SGL_RS14490 are separated by 147 nucleotides SGL_RS14490 and SGL_RS14495 are separated by 749 nucleotides
SGL_RS14485: SGL_RS14485 - transcription-repair coupling factor, at 2,701,931 to 2,705,530
_RS14485
SGL_RS14490: SGL_RS14490 - hypothetical protein, at 2,705,678 to 2,705,983
_RS14490
SGL_RS14495: SGL_RS14495 - septal ring lytic transglycosylase RlpA family protein, at 2,706,733 to 2,707,698
_RS14495
Position (kb)
2705
2706 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6
7
8
9
10 at 2704.819 kb on - strand, within SGL_RS14485 at 2704.887 kb on + strand, within SGL_RS14485 at 2704.889 kb on + strand, within SGL_RS14485 at 2704.909 kb on + strand, within SGL_RS14485 at 2704.956 kb on - strand, within SGL_RS14485 at 2705.067 kb on + strand, within SGL_RS14485 at 2705.067 kb on + strand, within SGL_RS14485 at 2705.075 kb on - strand, within SGL_RS14485 at 2705.085 kb on - strand, within SGL_RS14485 at 2705.145 kb on + strand, within SGL_RS14485 at 2705.169 kb on - strand, within SGL_RS14485 at 2705.225 kb on - strand at 2705.301 kb on - strand at 2705.385 kb on - strand at 2705.423 kb on + strand at 2705.423 kb on + strand at 2705.431 kb on - strand at 2705.436 kb on - strand at 2705.514 kb on + strand at 2705.514 kb on + strand at 2705.514 kb on + strand at 2705.522 kb on - strand at 2705.522 kb on - strand at 2705.522 kb on - strand at 2705.522 kb on - strand at 2705.522 kb on - strand at 2705.780 kb on + strand, within SGL_RS14490 at 2705.788 kb on - strand, within SGL_RS14490 at 2705.897 kb on - strand, within SGL_RS14490 at 2705.977 kb on + strand at 2706.088 kb on + strand at 2706.189 kb on - strand at 2706.639 kb on - strand at 2706.641 kb on + strand at 2706.649 kb on - strand at 2706.649 kb on - strand at 2706.903 kb on - strand, within SGL_RS14495
Per-strain Table
Position Strand Gene LocusTag Fraction medium light; bubbling remove 2,704,819 - SGL_RS14485 0.80 +9.7 2,704,887 + SGL_RS14485 0.82 +9.4 2,704,889 + SGL_RS14485 0.82 +10.0 2,704,909 + SGL_RS14485 0.83 +9.3 2,704,956 - SGL_RS14485 0.84 +10.2 2,705,067 + SGL_RS14485 0.87 +9.8 2,705,067 + SGL_RS14485 0.87 +9.8 2,705,075 - SGL_RS14485 0.87 +10.2 2,705,085 - SGL_RS14485 0.88 +9.7 2,705,145 + SGL_RS14485 0.89 +9.9 2,705,169 - SGL_RS14485 0.90 +10.0 2,705,225 - +8.8 2,705,301 - +10.0 2,705,385 - +9.4 2,705,423 + +2.4 2,705,423 + +1.5 2,705,431 - +3.5 2,705,436 - +5.3 2,705,514 + -0.9 2,705,514 + +0.6 2,705,514 + -0.5 2,705,522 - -0.2 2,705,522 - -0.9 2,705,522 - +1.9 2,705,522 - +0.1 2,705,522 - -1.9 2,705,780 + SGL_RS14490 0.33 +1.3 2,705,788 - SGL_RS14490 0.36 +0.2 2,705,897 - SGL_RS14490 0.72 +1.2 2,705,977 + -0.3 2,706,088 + +1.0 2,706,189 - +0.5 2,706,639 - +6.9 2,706,641 + +5.8 2,706,649 - +7.3 2,706,649 - +7.0 2,706,903 - SGL_RS14495 0.18 +5.4
Or see this region's nucleotide sequence