Experiment: medium light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS14055 and SGL_RS14060 overlap by 4 nucleotides SGL_RS14060 and SGL_RS14065 are separated by 10 nucleotides SGL_RS14065 and SGL_RS14070 are separated by 24 nucleotides SGL_RS14070 and SGL_RS14075 are separated by 102 nucleotides
SGL_RS14055: SGL_RS14055 - phosphoribosylglycinamide formyltransferase, at 2,613,717 to 2,614,370
_RS14055
SGL_RS14060: SGL_RS14060 - PD-(D/E)XK nuclease family protein, at 2,614,367 to 2,615,089
_RS14060
SGL_RS14065: SGL_RS14065 - AAA family ATPase, at 2,615,100 to 2,616,599
_RS14065
SGL_RS14070: SGL_RS14070 - class I SAM-dependent methyltransferase, at 2,616,624 to 2,617,382
_RS14070
SGL_RS14075: SGL_RS14075 - CAAD domain-containing protein, at 2,617,485 to 2,617,889
_RS14075
Position (kb)
2615
2616
2617 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3 at 2614.124 kb on + strand, within SGL_RS14055 at 2614.169 kb on + strand, within SGL_RS14055 at 2614.169 kb on - strand, within SGL_RS14055 at 2614.177 kb on - strand, within SGL_RS14055 at 2614.206 kb on + strand, within SGL_RS14055 at 2614.206 kb on + strand, within SGL_RS14055 at 2614.216 kb on - strand, within SGL_RS14055 at 2614.250 kb on - strand, within SGL_RS14055 at 2614.371 kb on - strand at 2614.371 kb on - strand at 2614.378 kb on - strand at 2614.416 kb on + strand at 2614.449 kb on - strand, within SGL_RS14060 at 2614.536 kb on - strand, within SGL_RS14060 at 2614.572 kb on + strand, within SGL_RS14060 at 2614.605 kb on - strand, within SGL_RS14060 at 2614.678 kb on + strand, within SGL_RS14060 at 2614.678 kb on - strand, within SGL_RS14060 at 2614.821 kb on - strand, within SGL_RS14060 at 2615.017 kb on + strand at 2615.032 kb on - strand at 2615.146 kb on - strand at 2615.161 kb on - strand at 2615.205 kb on + strand at 2615.213 kb on - strand at 2615.229 kb on + strand at 2615.261 kb on - strand, within SGL_RS14065 at 2615.434 kb on - strand, within SGL_RS14065 at 2615.522 kb on + strand, within SGL_RS14065 at 2615.522 kb on + strand, within SGL_RS14065 at 2615.528 kb on - strand, within SGL_RS14065 at 2615.625 kb on + strand, within SGL_RS14065 at 2615.625 kb on + strand, within SGL_RS14065 at 2615.627 kb on - strand, within SGL_RS14065 at 2615.855 kb on + strand, within SGL_RS14065 at 2615.881 kb on + strand, within SGL_RS14065 at 2615.904 kb on - strand, within SGL_RS14065 at 2615.965 kb on + strand, within SGL_RS14065 at 2616.053 kb on - strand, within SGL_RS14065 at 2616.087 kb on + strand, within SGL_RS14065 at 2616.089 kb on - strand, within SGL_RS14065 at 2616.155 kb on - strand, within SGL_RS14065 at 2616.282 kb on + strand, within SGL_RS14065 at 2616.311 kb on + strand, within SGL_RS14065 at 2616.342 kb on + strand, within SGL_RS14065 at 2616.357 kb on - strand, within SGL_RS14065 at 2616.430 kb on + strand, within SGL_RS14065 at 2616.432 kb on - strand, within SGL_RS14065 at 2616.499 kb on - strand at 2616.500 kb on - strand at 2616.643 kb on - strand at 2616.796 kb on + strand, within SGL_RS14070 at 2616.960 kb on + strand, within SGL_RS14070 at 2617.125 kb on - strand, within SGL_RS14070 at 2617.184 kb on - strand, within SGL_RS14070 at 2617.213 kb on + strand, within SGL_RS14070 at 2617.307 kb on + strand at 2617.340 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction medium light; bubbling remove 2,614,124 + SGL_RS14055 0.62 -4.9 2,614,169 + SGL_RS14055 0.69 -0.7 2,614,169 - SGL_RS14055 0.69 -3.1 2,614,177 - SGL_RS14055 0.70 -4.0 2,614,206 + SGL_RS14055 0.75 -3.6 2,614,206 + SGL_RS14055 0.75 -3.5 2,614,216 - SGL_RS14055 0.76 -3.8 2,614,250 - SGL_RS14055 0.81 -3.5 2,614,371 - -2.6 2,614,371 - -1.7 2,614,378 - -2.4 2,614,416 + -1.3 2,614,449 - SGL_RS14060 0.11 -1.5 2,614,536 - SGL_RS14060 0.23 -2.3 2,614,572 + SGL_RS14060 0.28 -1.2 2,614,605 - SGL_RS14060 0.33 -3.1 2,614,678 + SGL_RS14060 0.43 -1.6 2,614,678 - SGL_RS14060 0.43 -2.1 2,614,821 - SGL_RS14060 0.63 -1.8 2,615,017 + +0.5 2,615,032 - -2.9 2,615,146 - +1.0 2,615,161 - +1.5 2,615,205 + -0.4 2,615,213 - +3.1 2,615,229 + +1.2 2,615,261 - SGL_RS14065 0.11 +1.6 2,615,434 - SGL_RS14065 0.22 +2.0 2,615,522 + SGL_RS14065 0.28 +0.2 2,615,522 + SGL_RS14065 0.28 +1.3 2,615,528 - SGL_RS14065 0.29 +1.3 2,615,625 + SGL_RS14065 0.35 +0.5 2,615,625 + SGL_RS14065 0.35 -1.0 2,615,627 - SGL_RS14065 0.35 +0.8 2,615,855 + SGL_RS14065 0.50 +1.1 2,615,881 + SGL_RS14065 0.52 +0.0 2,615,904 - SGL_RS14065 0.54 +1.4 2,615,965 + SGL_RS14065 0.58 -0.1 2,616,053 - SGL_RS14065 0.64 +1.8 2,616,087 + SGL_RS14065 0.66 +0.2 2,616,089 - SGL_RS14065 0.66 +1.3 2,616,155 - SGL_RS14065 0.70 +1.7 2,616,282 + SGL_RS14065 0.79 +1.5 2,616,311 + SGL_RS14065 0.81 +1.3 2,616,342 + SGL_RS14065 0.83 -0.6 2,616,357 - SGL_RS14065 0.84 +1.2 2,616,430 + SGL_RS14065 0.89 +1.0 2,616,432 - SGL_RS14065 0.89 -1.9 2,616,499 - +2.2 2,616,500 - +1.2 2,616,643 - +0.9 2,616,796 + SGL_RS14070 0.23 -2.7 2,616,960 + SGL_RS14070 0.44 -2.3 2,617,125 - SGL_RS14070 0.66 -0.2 2,617,184 - SGL_RS14070 0.74 +0.1 2,617,213 + SGL_RS14070 0.78 -0.9 2,617,307 + -0.0 2,617,340 - -0.5
Or see this region's nucleotide sequence