Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14030

Experiment: medium light; bubbling

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS14025 and SGL_RS14030 are separated by 454 nucleotidesSGL_RS14030 and SGL_RS14035 are separated by 14 nucleotidesSGL_RS14035 and SGL_RS14040 are separated by 189 nucleotides SGL_RS14025: SGL_RS14025 - gamma-glutamyl-phosphate reductase, at 2,606,095 to 2,607,357 _RS14025 SGL_RS14030: SGL_RS14030 - ATP-binding protein, at 2,607,812 to 2,610,058 _RS14030 SGL_RS14035: SGL_RS14035 - response regulator, at 2,610,073 to 2,610,516 _RS14035 SGL_RS14040: SGL_RS14040 - excinuclease ABC subunit UvrB, at 2,610,706 to 2,612,715 _RS14040 Position (kb) 2607 2608 2609 2610 2611Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8 9at 2606.850 kb on - strand, within SGL_RS14025at 2606.913 kb on - strand, within SGL_RS14025at 2607.027 kb on - strand, within SGL_RS14025at 2607.187 kb on + strand, within SGL_RS14025at 2607.187 kb on + strand, within SGL_RS14025at 2607.187 kb on + strand, within SGL_RS14025at 2607.187 kb on + strand, within SGL_RS14025at 2607.195 kb on - strand, within SGL_RS14025at 2607.195 kb on - strand, within SGL_RS14025at 2607.202 kb on - strand, within SGL_RS14025at 2607.252 kb on - strandat 2607.252 kb on - strandat 2607.264 kb on + strandat 2607.714 kb on - strandat 2607.796 kb on + strandat 2607.853 kb on + strandat 2607.890 kb on - strandat 2607.900 kb on + strandat 2607.900 kb on - strandat 2607.908 kb on - strandat 2608.039 kb on + strand, within SGL_RS14030at 2608.072 kb on - strand, within SGL_RS14030at 2608.183 kb on + strand, within SGL_RS14030at 2608.183 kb on + strand, within SGL_RS14030at 2608.191 kb on - strand, within SGL_RS14030at 2608.228 kb on + strand, within SGL_RS14030at 2608.238 kb on + strand, within SGL_RS14030at 2608.354 kb on + strand, within SGL_RS14030at 2608.417 kb on - strand, within SGL_RS14030at 2608.528 kb on + strand, within SGL_RS14030at 2608.583 kb on - strand, within SGL_RS14030at 2608.608 kb on + strand, within SGL_RS14030at 2608.659 kb on + strand, within SGL_RS14030at 2608.695 kb on + strand, within SGL_RS14030at 2608.918 kb on + strand, within SGL_RS14030at 2608.981 kb on - strand, within SGL_RS14030at 2609.232 kb on + strand, within SGL_RS14030at 2609.239 kb on - strand, within SGL_RS14030at 2609.588 kb on - strand, within SGL_RS14030at 2609.645 kb on + strand, within SGL_RS14030at 2609.829 kb on + strand, within SGL_RS14030at 2609.854 kb on - strandat 2610.017 kb on - strandat 2610.150 kb on - strand, within SGL_RS14035at 2610.150 kb on - strand, within SGL_RS14035at 2610.225 kb on + strand, within SGL_RS14035at 2610.360 kb on + strand, within SGL_RS14035

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction medium light; bubbling
remove
2,606,850 - SGL_RS14025 0.60 +8.6
2,606,913 - SGL_RS14025 0.65 +9.7
2,607,027 - SGL_RS14025 0.74 +8.3
2,607,187 + SGL_RS14025 0.86 +9.1
2,607,187 + SGL_RS14025 0.86 +8.4
2,607,187 + SGL_RS14025 0.86 +7.8
2,607,187 + SGL_RS14025 0.86 +7.7
2,607,195 - SGL_RS14025 0.87 +8.2
2,607,195 - SGL_RS14025 0.87 +8.7
2,607,202 - SGL_RS14025 0.88 +8.3
2,607,252 - +8.5
2,607,252 - +9.1
2,607,264 + +8.5
2,607,714 - +2.6
2,607,796 + +2.1
2,607,853 + +1.5
2,607,890 - +0.7
2,607,900 + +1.9
2,607,900 - +1.0
2,607,908 - +1.0
2,608,039 + SGL_RS14030 0.10 +1.1
2,608,072 - SGL_RS14030 0.12 +1.7
2,608,183 + SGL_RS14030 0.17 +1.0
2,608,183 + SGL_RS14030 0.17 +1.0
2,608,191 - SGL_RS14030 0.17 +0.6
2,608,228 + SGL_RS14030 0.19 +0.7
2,608,238 + SGL_RS14030 0.19 +1.8
2,608,354 + SGL_RS14030 0.24 +0.8
2,608,417 - SGL_RS14030 0.27 +0.8
2,608,528 + SGL_RS14030 0.32 -0.3
2,608,583 - SGL_RS14030 0.34 -0.2
2,608,608 + SGL_RS14030 0.35 -0.5
2,608,659 + SGL_RS14030 0.38 +1.0
2,608,695 + SGL_RS14030 0.39 -0.3
2,608,918 + SGL_RS14030 0.49 +0.8
2,608,981 - SGL_RS14030 0.52 -0.6
2,609,232 + SGL_RS14030 0.63 -1.8
2,609,239 - SGL_RS14030 0.64 +0.5
2,609,588 - SGL_RS14030 0.79 +0.4
2,609,645 + SGL_RS14030 0.82 +1.4
2,609,829 + SGL_RS14030 0.90 +0.5
2,609,854 - -0.5
2,610,017 - +0.4
2,610,150 - SGL_RS14035 0.17 +1.0
2,610,150 - SGL_RS14035 0.17 +1.1
2,610,225 + SGL_RS14035 0.34 +0.6
2,610,360 + SGL_RS14035 0.65 +1.2

Or see this region's nucleotide sequence