Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS09005

Experiment: medium light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS08995 and SGL_RS09000 are separated by 86 nucleotidesSGL_RS09000 and SGL_RS09005 are separated by 583 nucleotidesSGL_RS09005 and SGL_RS09010 are separated by 118 nucleotides SGL_RS08995: SGL_RS08995 - NblA/ycf18 family protein, at 1,523,527 to 1,523,709 _RS08995 SGL_RS09000: SGL_RS09000 - NblA/ycf18 family protein, at 1,523,796 to 1,523,984 _RS09000 SGL_RS09005: SGL_RS09005 - hypothetical protein, at 1,524,568 to 1,525,086 _RS09005 SGL_RS09010: SGL_RS09010 - zinc ribbon domain-containing protein, at 1,525,205 to 1,526,182 _RS09010 Position (kb) 1524 1525 1526Strain fitness (log2 ratio) -3 -2 -1 0 1at 1523.634 kb on - strand, within SGL_RS08995at 1523.685 kb on + strand, within SGL_RS08995at 1523.685 kb on + strand, within SGL_RS08995at 1523.693 kb on - strandat 1523.806 kb on + strandat 1523.897 kb on + strand, within SGL_RS09000at 1524.101 kb on + strandat 1524.302 kb on + strandat 1524.663 kb on + strand, within SGL_RS09005at 1524.786 kb on - strand, within SGL_RS09005at 1524.804 kb on + strand, within SGL_RS09005at 1524.804 kb on + strand, within SGL_RS09005at 1524.889 kb on + strand, within SGL_RS09005at 1524.952 kb on + strand, within SGL_RS09005at 1524.960 kb on - strand, within SGL_RS09005at 1525.257 kb on - strandat 1525.289 kb on + strandat 1525.296 kb on + strandat 1525.315 kb on - strand, within SGL_RS09010at 1525.356 kb on + strand, within SGL_RS09010at 1525.364 kb on - strand, within SGL_RS09010at 1525.746 kb on + strand, within SGL_RS09010at 1525.761 kb on + strand, within SGL_RS09010at 1525.952 kb on + strand, within SGL_RS09010at 1525.953 kb on + strand, within SGL_RS09010at 1526.009 kb on - strand, within SGL_RS09010

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Per-strain Table

Position Strand Gene LocusTag Fraction medium light; bubbling
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1,523,634 - SGL_RS08995 0.58 -0.5
1,523,685 + SGL_RS08995 0.86 +0.4
1,523,685 + SGL_RS08995 0.86 -0.5
1,523,693 - -1.4
1,523,806 + -1.4
1,523,897 + SGL_RS09000 0.53 -3.1
1,524,101 + -1.4
1,524,302 + -0.1
1,524,663 + SGL_RS09005 0.18 -1.7
1,524,786 - SGL_RS09005 0.42 +0.4
1,524,804 + SGL_RS09005 0.45 -0.4
1,524,804 + SGL_RS09005 0.45 -0.6
1,524,889 + SGL_RS09005 0.62 +0.5
1,524,952 + SGL_RS09005 0.74 -1.1
1,524,960 - SGL_RS09005 0.76 +0.9
1,525,257 - -0.4
1,525,289 + +0.1
1,525,296 + -0.5
1,525,315 - SGL_RS09010 0.11 -0.3
1,525,356 + SGL_RS09010 0.15 -0.0
1,525,364 - SGL_RS09010 0.16 +0.9
1,525,746 + SGL_RS09010 0.55 +0.5
1,525,761 + SGL_RS09010 0.57 +0.8
1,525,952 + SGL_RS09010 0.76 -0.8
1,525,953 + SGL_RS09010 0.76 +0.0
1,526,009 - SGL_RS09010 0.82 -1.3

Or see this region's nucleotide sequence