Experiment: medium light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS08895 and SGL_RS08900 are separated by 105 nucleotides SGL_RS08900 and SGL_RS08905 are separated by 161 nucleotides SGL_RS08905 and SGL_RS08910 are separated by 78 nucleotides
SGL_RS08895: SGL_RS08895 - FAD-dependent oxidoreductase, at 1,504,818 to 1,506,770
_RS08895
SGL_RS08900: SGL_RS08900 - DUF6335 family protein, at 1,506,876 to 1,507,319
_RS08900
SGL_RS08905: SGL_RS08905 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 1,507,481 to 1,508,092
_RS08905
SGL_RS08910: SGL_RS08910 - hypothetical protein, at 1,508,171 to 1,508,386
_RS08910
Position (kb)
1506
1507
1508 Strain fitness (log2 ratio)
-2
-1
0
1 at 1505.900 kb on - strand, within SGL_RS08895 at 1506.146 kb on - strand, within SGL_RS08895 at 1506.408 kb on - strand, within SGL_RS08895 at 1506.467 kb on - strand, within SGL_RS08895 at 1506.537 kb on + strand, within SGL_RS08895 at 1506.702 kb on - strand at 1506.826 kb on + strand at 1506.849 kb on + strand at 1506.934 kb on - strand, within SGL_RS08900 at 1507.187 kb on + strand, within SGL_RS08900 at 1507.255 kb on + strand, within SGL_RS08900 at 1507.718 kb on + strand, within SGL_RS08905 at 1507.726 kb on - strand, within SGL_RS08905 at 1508.129 kb on - strand at 1508.129 kb on - strand at 1508.195 kb on + strand, within SGL_RS08910
Per-strain Table
Position Strand Gene LocusTag Fraction medium light; bubbling remove 1,505,900 - SGL_RS08895 0.55 +0.5 1,506,146 - SGL_RS08895 0.68 +1.6 1,506,408 - SGL_RS08895 0.81 -0.6 1,506,467 - SGL_RS08895 0.84 -0.8 1,506,537 + SGL_RS08895 0.88 -0.7 1,506,702 - +1.4 1,506,826 + -0.8 1,506,849 + +0.5 1,506,934 - SGL_RS08900 0.13 -1.1 1,507,187 + SGL_RS08900 0.70 -2.1 1,507,255 + SGL_RS08900 0.85 +0.5 1,507,718 + SGL_RS08905 0.39 +0.6 1,507,726 - SGL_RS08905 0.40 -0.0 1,508,129 - -0.8 1,508,129 - +0.1 1,508,195 + SGL_RS08910 0.11 +1.2
Or see this region's nucleotide sequence