Experiment: medium light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS08030 and SGL_RS08035 are separated by 57 nucleotides SGL_RS08035 and SGL_RS08040 are separated by 248 nucleotides
SGL_RS08030: SGL_RS08030 - glucose-6-phosphate dehydrogenase assembly protein OpcA, at 1,316,227 to 1,317,654
_RS08030
SGL_RS08035: SGL_RS08035 - amino acid ABC transporter ATP-binding protein, at 1,317,712 to 1,318,470
_RS08035
SGL_RS08040: SGL_RS08040 - transcriptional repressor LexA, at 1,318,719 to 1,319,330
_RS08040
Position (kb)
1317
1318
1319 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1316.746 kb on - strand, within SGL_RS08030 at 1316.784 kb on - strand, within SGL_RS08030 at 1316.919 kb on - strand, within SGL_RS08030 at 1316.970 kb on + strand, within SGL_RS08030 at 1317.112 kb on - strand, within SGL_RS08030 at 1317.137 kb on + strand, within SGL_RS08030 at 1317.292 kb on - strand, within SGL_RS08030 at 1317.318 kb on - strand, within SGL_RS08030 at 1317.369 kb on + strand, within SGL_RS08030 at 1317.374 kb on + strand, within SGL_RS08030 at 1317.412 kb on - strand, within SGL_RS08030 at 1317.412 kb on - strand, within SGL_RS08030 at 1317.417 kb on - strand, within SGL_RS08030 at 1317.605 kb on + strand at 1317.692 kb on + strand at 1318.054 kb on + strand, within SGL_RS08035 at 1318.168 kb on - strand, within SGL_RS08035 at 1318.177 kb on + strand, within SGL_RS08035 at 1318.235 kb on - strand, within SGL_RS08035 at 1318.262 kb on - strand, within SGL_RS08035 at 1318.384 kb on + strand, within SGL_RS08035 at 1318.628 kb on + strand at 1318.837 kb on - strand, within SGL_RS08040 at 1319.135 kb on - strand, within SGL_RS08040 at 1319.337 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction medium light; bubbling remove 1,316,746 - SGL_RS08030 0.36 +0.9 1,316,784 - SGL_RS08030 0.39 -2.5 1,316,919 - SGL_RS08030 0.48 -1.9 1,316,970 + SGL_RS08030 0.52 -0.7 1,317,112 - SGL_RS08030 0.62 +0.3 1,317,137 + SGL_RS08030 0.64 -2.8 1,317,292 - SGL_RS08030 0.75 -0.9 1,317,318 - SGL_RS08030 0.76 -0.3 1,317,369 + SGL_RS08030 0.80 +0.4 1,317,374 + SGL_RS08030 0.80 +0.3 1,317,412 - SGL_RS08030 0.83 -1.8 1,317,412 - SGL_RS08030 0.83 -3.4 1,317,417 - SGL_RS08030 0.83 -0.9 1,317,605 + -2.1 1,317,692 + -1.8 1,318,054 + SGL_RS08035 0.45 -1.0 1,318,168 - SGL_RS08035 0.60 -1.0 1,318,177 + SGL_RS08035 0.61 -4.1 1,318,235 - SGL_RS08035 0.69 -1.5 1,318,262 - SGL_RS08035 0.72 -1.6 1,318,384 + SGL_RS08035 0.89 -0.9 1,318,628 + -0.3 1,318,837 - SGL_RS08040 0.19 -0.3 1,319,135 - SGL_RS08040 0.68 -0.3 1,319,337 - -0.0
Or see this region's nucleotide sequence