Experiment: medium light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS07160 and SGL_RS07165 are separated by 48 nucleotides SGL_RS07165 and SGL_RS07170 are separated by 97 nucleotides SGL_RS07170 and SGL_RS07175 are separated by 93 nucleotides
SGL_RS07160: SGL_RS07160 - Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA, at 1,135,716 to 1,137,167
_RS07160
SGL_RS07165: SGL_RS07165 - M23 family metallopeptidase, at 1,137,216 to 1,138,112
_RS07165
SGL_RS07170: SGL_RS07170 - glycine cleavage system protein GcvH, at 1,138,210 to 1,138,608
_RS07170
SGL_RS07175: SGL_RS07175 - NFACT family protein, at 1,138,702 to 1,140,474
_RS07175
Position (kb)
1137
1138
1139 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1137.347 kb on + strand, within SGL_RS07165 at 1137.347 kb on + strand, within SGL_RS07165 at 1137.447 kb on + strand, within SGL_RS07165 at 1137.485 kb on + strand, within SGL_RS07165 at 1138.309 kb on + strand, within SGL_RS07170 at 1138.385 kb on - strand, within SGL_RS07170 at 1138.414 kb on + strand, within SGL_RS07170 at 1138.578 kb on + strand at 1138.589 kb on + strand at 1138.623 kb on + strand at 1138.623 kb on + strand at 1138.723 kb on + strand at 1138.746 kb on + strand at 1138.804 kb on + strand at 1138.877 kb on + strand at 1138.947 kb on + strand, within SGL_RS07175 at 1138.947 kb on + strand, within SGL_RS07175 at 1138.955 kb on - strand, within SGL_RS07175 at 1139.046 kb on - strand, within SGL_RS07175
Per-strain Table
Position Strand Gene LocusTag Fraction medium light; bubbling remove 1,137,347 + SGL_RS07165 0.15 -1.7 1,137,347 + SGL_RS07165 0.15 -1.2 1,137,447 + SGL_RS07165 0.26 -0.4 1,137,485 + SGL_RS07165 0.30 -2.5 1,138,309 + SGL_RS07170 0.25 -2.9 1,138,385 - SGL_RS07170 0.44 +0.6 1,138,414 + SGL_RS07170 0.51 -0.2 1,138,578 + +2.9 1,138,589 + +1.6 1,138,623 + +0.3 1,138,623 + +0.6 1,138,723 + +2.8 1,138,746 + +2.8 1,138,804 + -0.1 1,138,877 + +2.7 1,138,947 + SGL_RS07175 0.14 +2.7 1,138,947 + SGL_RS07175 0.14 +2.2 1,138,955 - SGL_RS07175 0.14 +0.8 1,139,046 - SGL_RS07175 0.19 +3.6
Or see this region's nucleotide sequence