Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS07040

Experiment: medium light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS07035 and SGL_RS07040 are separated by 187 nucleotidesSGL_RS07040 and SGL_RS07045 are separated by 382 nucleotides SGL_RS07035: SGL_RS07035 - pyruvate kinase, at 1,102,283 to 1,104,058 _RS07035 SGL_RS07040: SGL_RS07040 - DUF1824 family protein, at 1,104,246 to 1,104,647 _RS07040 SGL_RS07045: SGL_RS07045 - TIGR02652 family protein, at 1,105,030 to 1,105,545 _RS07045 Position (kb) 1104 1105Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1104.100 kb on - strandat 1104.179 kb on + strandat 1104.194 kb on - strandat 1104.278 kb on + strandat 1104.298 kb on + strand, within SGL_RS07040at 1104.338 kb on - strand, within SGL_RS07040at 1104.398 kb on + strand, within SGL_RS07040at 1104.406 kb on - strand, within SGL_RS07040at 1104.474 kb on - strand, within SGL_RS07040at 1104.591 kb on + strand, within SGL_RS07040at 1104.860 kb on + strandat 1105.129 kb on - strand, within SGL_RS07045at 1105.151 kb on + strand, within SGL_RS07045at 1105.164 kb on + strand, within SGL_RS07045at 1105.182 kb on - strand, within SGL_RS07045at 1105.220 kb on + strand, within SGL_RS07045at 1105.275 kb on + strand, within SGL_RS07045at 1105.280 kb on + strand, within SGL_RS07045at 1105.288 kb on - strand, within SGL_RS07045at 1105.291 kb on + strand, within SGL_RS07045at 1105.291 kb on + strand, within SGL_RS07045at 1105.454 kb on - strand, within SGL_RS07045at 1105.462 kb on + strand, within SGL_RS07045at 1105.633 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction medium light; bubbling
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1,104,100 - -2.9
1,104,179 + +2.6
1,104,194 - -0.5
1,104,278 + +2.6
1,104,298 + SGL_RS07040 0.13 +2.8
1,104,338 - SGL_RS07040 0.23 +2.7
1,104,398 + SGL_RS07040 0.38 +2.9
1,104,406 - SGL_RS07040 0.40 +2.2
1,104,474 - SGL_RS07040 0.57 +1.1
1,104,591 + SGL_RS07040 0.86 +2.3
1,104,860 + -1.2
1,105,129 - SGL_RS07045 0.19 +0.3
1,105,151 + SGL_RS07045 0.23 +1.0
1,105,164 + SGL_RS07045 0.26 +4.5
1,105,182 - SGL_RS07045 0.29 -1.1
1,105,220 + SGL_RS07045 0.37 -2.5
1,105,275 + SGL_RS07045 0.47 -0.1
1,105,280 + SGL_RS07045 0.48 -2.7
1,105,288 - SGL_RS07045 0.50 +0.0
1,105,291 + SGL_RS07045 0.51 -1.3
1,105,291 + SGL_RS07045 0.51 -2.3
1,105,454 - SGL_RS07045 0.82 -1.3
1,105,462 + SGL_RS07045 0.84 -0.1
1,105,633 - -0.5

Or see this region's nucleotide sequence