Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS03505

Experiment: medium light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS03490 and SGL_RS03495 are separated by 23 nucleotidesSGL_RS03495 and SGL_RS03500 are separated by 99 nucleotidesSGL_RS03500 and SGL_RS03505 are separated by 65 nucleotidesSGL_RS03505 and SGL_RS19420 are separated by 173 nucleotidesSGL_RS19420 and SGL_RS03515 are separated by 577 nucleotides SGL_RS03490: SGL_RS03490 - YaaW family protein, at 343,863 to 344,720 _RS03490 SGL_RS03495: SGL_RS03495 - metal-binding protein, at 344,744 to 345,298 _RS03495 SGL_RS03500: SGL_RS03500 - tRNA-Val, at 345,398 to 345,470 _RS03500 SGL_RS03505: SGL_RS03505 - exopolysaccharide transport family protein, at 345,536 to 347,806 _RS03505 SGL_RS19420: SGL_RS19420 - hypothetical protein, at 347,980 to 348,123 _RS19420 SGL_RS03515: SGL_RS03515 - Uma2 family endonuclease, at 348,701 to 349,429 _RS03515 Position (kb) 345 346 347 348Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 344.597 kb on - strand, within SGL_RS03490at 344.613 kb on + strand, within SGL_RS03490at 344.684 kb on - strandat 344.842 kb on + strand, within SGL_RS03495at 344.850 kb on - strand, within SGL_RS03495at 344.913 kb on - strand, within SGL_RS03495at 344.965 kb on + strand, within SGL_RS03495at 345.178 kb on + strand, within SGL_RS03495at 345.265 kb on + strandat 345.305 kb on + strandat 345.605 kb on + strandat 345.605 kb on - strandat 345.882 kb on - strand, within SGL_RS03505at 345.977 kb on + strand, within SGL_RS03505at 346.174 kb on + strand, within SGL_RS03505at 346.205 kb on + strand, within SGL_RS03505at 346.231 kb on - strand, within SGL_RS03505at 346.272 kb on - strand, within SGL_RS03505at 346.276 kb on + strand, within SGL_RS03505at 346.326 kb on + strand, within SGL_RS03505at 346.361 kb on + strand, within SGL_RS03505at 346.379 kb on - strand, within SGL_RS03505at 346.504 kb on + strand, within SGL_RS03505at 346.512 kb on - strand, within SGL_RS03505at 346.512 kb on - strand, within SGL_RS03505at 346.534 kb on + strand, within SGL_RS03505at 346.663 kb on + strand, within SGL_RS03505at 346.737 kb on + strand, within SGL_RS03505at 346.745 kb on - strand, within SGL_RS03505at 346.821 kb on + strand, within SGL_RS03505at 346.974 kb on - strand, within SGL_RS03505at 347.103 kb on - strand, within SGL_RS03505at 347.336 kb on + strand, within SGL_RS03505at 347.360 kb on - strand, within SGL_RS03505at 347.668 kb on + strandat 347.690 kb on + strandat 347.753 kb on + strandat 347.804 kb on - strandat 347.858 kb on + strandat 347.883 kb on + strandat 347.931 kb on - strandat 347.933 kb on + strandat 347.933 kb on + strandat 347.933 kb on + strandat 347.985 kb on - strandat 347.999 kb on - strand, within SGL_RS19420at 348.102 kb on - strand, within SGL_RS19420at 348.139 kb on + strandat 348.395 kb on - strandat 348.396 kb on + strandat 348.456 kb on + strandat 348.595 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction medium light; bubbling
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344,597 - SGL_RS03490 0.86 -0.3
344,613 + SGL_RS03490 0.87 -0.1
344,684 - -0.3
344,842 + SGL_RS03495 0.18 -2.7
344,850 - SGL_RS03495 0.19 -2.1
344,913 - SGL_RS03495 0.30 -0.8
344,965 + SGL_RS03495 0.40 -3.1
345,178 + SGL_RS03495 0.78 -0.5
345,265 + -1.3
345,305 + -1.6
345,605 + +0.2
345,605 - -1.1
345,882 - SGL_RS03505 0.15 -3.1
345,977 + SGL_RS03505 0.19 -4.7
346,174 + SGL_RS03505 0.28 -3.8
346,205 + SGL_RS03505 0.29 -6.6
346,231 - SGL_RS03505 0.31 -3.3
346,272 - SGL_RS03505 0.32 -1.6
346,276 + SGL_RS03505 0.33 -2.9
346,326 + SGL_RS03505 0.35 -5.6
346,361 + SGL_RS03505 0.36 -4.0
346,379 - SGL_RS03505 0.37 -0.5
346,504 + SGL_RS03505 0.43 -2.7
346,512 - SGL_RS03505 0.43 -3.1
346,512 - SGL_RS03505 0.43 -3.9
346,534 + SGL_RS03505 0.44 -3.8
346,663 + SGL_RS03505 0.50 -3.4
346,737 + SGL_RS03505 0.53 -3.7
346,745 - SGL_RS03505 0.53 -3.8
346,821 + SGL_RS03505 0.57 -4.5
346,974 - SGL_RS03505 0.63 -1.0
347,103 - SGL_RS03505 0.69 -3.8
347,336 + SGL_RS03505 0.79 -2.6
347,360 - SGL_RS03505 0.80 -4.2
347,668 + -3.6
347,690 + -6.0
347,753 + -6.9
347,804 - -4.5
347,858 + -2.6
347,883 + -1.0
347,931 - -0.5
347,933 + -0.9
347,933 + -0.2
347,933 + -1.7
347,985 - +0.8
347,999 - SGL_RS19420 0.13 -0.2
348,102 - SGL_RS19420 0.85 -1.0
348,139 + -3.1
348,395 - -1.2
348,396 + -0.7
348,456 + -1.4
348,595 + -1.5

Or see this region's nucleotide sequence