Experiment: medium light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS01990 and SGL_RS01995 are separated by 69 nucleotides SGL_RS01995 and SGL_RS02000 overlap by 17 nucleotides SGL_RS02000 and SGL_RS02005 are separated by 346 nucleotides
SGL_RS01990: SGL_RS01990 - TonB-dependent siderophore receptor, at 29,968 to 32,454
_RS01990
SGL_RS01995: SGL_RS01995 - biopolymer transporter ExbD, at 32,524 to 32,928
_RS01995
SGL_RS02000: SGL_RS02000 - MotA/TolQ/ExbB proton channel family protein, at 32,912 to 33,544
_RS02000
SGL_RS02005: SGL_RS02005 - energy transducer TonB, at 33,891 to 35,489
_RS02005
Position (kb) 32
33
34 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6
7
8
9
10
11 at 31.939 kb on + strand, within SGL_RS01990 at 31.993 kb on + strand, within SGL_RS01990 at 32.013 kb on + strand, within SGL_RS01990 at 32.013 kb on + strand, within SGL_RS01990 at 32.182 kb on + strand, within SGL_RS01990 at 32.182 kb on + strand, within SGL_RS01990 at 32.202 kb on + strand, within SGL_RS01990 at 32.210 kb on - strand at 32.228 kb on + strand at 32.233 kb on + strand at 32.236 kb on - strand at 32.277 kb on + strand at 32.292 kb on - strand at 32.386 kb on + strand at 32.419 kb on + strand at 32.431 kb on + strand at 32.571 kb on + strand, within SGL_RS01995 at 32.704 kb on - strand, within SGL_RS01995 at 32.903 kb on + strand at 32.911 kb on - strand at 33.016 kb on + strand, within SGL_RS02000 at 33.039 kb on + strand, within SGL_RS02000 at 33.044 kb on + strand, within SGL_RS02000 at 33.071 kb on + strand, within SGL_RS02000 at 33.071 kb on + strand, within SGL_RS02000 at 33.086 kb on + strand, within SGL_RS02000 at 33.151 kb on - strand, within SGL_RS02000 at 33.361 kb on - strand, within SGL_RS02000 at 33.571 kb on + strand at 33.574 kb on - strand at 33.969 kb on + strand at 34.012 kb on - strand at 34.014 kb on - strand at 34.047 kb on - strand at 34.072 kb on + strand, within SGL_RS02005 at 34.089 kb on - strand, within SGL_RS02005 at 34.151 kb on + strand, within SGL_RS02005 at 34.194 kb on + strand, within SGL_RS02005 at 34.199 kb on + strand, within SGL_RS02005 at 34.229 kb on + strand, within SGL_RS02005 at 34.229 kb on + strand, within SGL_RS02005 at 34.236 kb on + strand, within SGL_RS02005 at 34.277 kb on - strand, within SGL_RS02005 at 34.310 kb on + strand, within SGL_RS02005 at 34.318 kb on - strand, within SGL_RS02005 at 34.318 kb on - strand, within SGL_RS02005 at 34.348 kb on - strand, within SGL_RS02005 at 34.372 kb on - strand, within SGL_RS02005 at 34.372 kb on - strand, within SGL_RS02005 at 34.376 kb on + strand, within SGL_RS02005 at 34.384 kb on - strand, within SGL_RS02005 at 34.394 kb on - strand, within SGL_RS02005 at 34.394 kb on - strand, within SGL_RS02005 at 34.531 kb on - strand, within SGL_RS02005
Per-strain Table
Position Strand Gene LocusTag Fraction medium light; bubbling remove 31,939 + SGL_RS01990 0.79 +9.4 31,993 + SGL_RS01990 0.81 +9.5 32,013 + SGL_RS01990 0.82 +8.3 32,013 + SGL_RS01990 0.82 +8.5 32,182 + SGL_RS01990 0.89 +9.3 32,182 + SGL_RS01990 0.89 +9.7 32,202 + SGL_RS01990 0.90 +9.3 32,210 - +8.4 32,228 + +8.7 32,233 + +9.5 32,236 - +9.4 32,277 + +9.5 32,292 - +8.1 32,386 + +9.4 32,419 + +9.4 32,431 + +9.2 32,571 + SGL_RS01995 0.12 +10.6 32,704 - SGL_RS01995 0.44 +10.0 32,903 + +9.8 32,911 - +10.0 33,016 + SGL_RS02000 0.16 +10.4 33,039 + SGL_RS02000 0.20 +10.5 33,044 + SGL_RS02000 0.21 +10.2 33,071 + SGL_RS02000 0.25 +10.5 33,071 + SGL_RS02000 0.25 +10.6 33,086 + SGL_RS02000 0.27 +10.5 33,151 - SGL_RS02000 0.38 +10.0 33,361 - SGL_RS02000 0.71 +11.1 33,571 + +11.4 33,574 - +10.6 33,969 + +2.7 34,012 - +4.6 34,014 - +4.6 34,047 - +4.9 34,072 + SGL_RS02005 0.11 +5.0 34,089 - SGL_RS02005 0.12 +5.3 34,151 + SGL_RS02005 0.16 +4.6 34,194 + SGL_RS02005 0.19 +5.0 34,199 + SGL_RS02005 0.19 +4.7 34,229 + SGL_RS02005 0.21 +4.1 34,229 + SGL_RS02005 0.21 +4.7 34,236 + SGL_RS02005 0.22 +3.8 34,277 - SGL_RS02005 0.24 +5.8 34,310 + SGL_RS02005 0.26 +5.0 34,318 - SGL_RS02005 0.27 +5.5 34,318 - SGL_RS02005 0.27 +5.7 34,348 - SGL_RS02005 0.29 +3.7 34,372 - SGL_RS02005 0.30 +5.3 34,372 - SGL_RS02005 0.30 +5.1 34,376 + SGL_RS02005 0.30 +5.9 34,384 - SGL_RS02005 0.31 +5.2 34,394 - SGL_RS02005 0.31 +5.9 34,394 - SGL_RS02005 0.31 +5.1 34,531 - SGL_RS02005 0.40 +1.5
Or see this region's nucleotide sequence