Experiment: medium light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS00435 and SGL_RS00440 are separated by 112 nucleotides SGL_RS00440 and SGL_RS00445 overlap by 4 nucleotides SGL_RS00445 and SGL_RS00450 are separated by 135 nucleotides SGL_RS00450 and SGL_RS00455 overlap by 4 nucleotides
SGL_RS00435: SGL_RS00435 - NAD(P)/FAD-dependent oxidoreductase, at 91,355 to 92,692
_RS00435
SGL_RS00440: SGL_RS00440 - type II toxin-antitoxin system VapC family toxin, at 92,805 to 93,236
_RS00440
SGL_RS00445: SGL_RS00445 - type II toxin-antitoxin system prevent-host-death family antitoxin, at 93,233 to 93,520
_RS00445
SGL_RS00450: SGL_RS00450 - recombinase family protein, at 93,656 to 93,865
_RS00450
SGL_RS00455: SGL_RS00455 - WYL domain-containing transcriptional regulator, at 93,862 to 94,866
_RS00455
Position (kb) 93
94 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6 at 92.866 kb on - strand, within SGL_RS00440 at 92.866 kb on - strand, within SGL_RS00440 at 92.894 kb on - strand, within SGL_RS00440 at 93.051 kb on + strand, within SGL_RS00440 at 93.113 kb on + strand, within SGL_RS00440 at 93.146 kb on - strand, within SGL_RS00440 at 93.170 kb on - strand, within SGL_RS00440 at 93.400 kb on + strand, within SGL_RS00445 at 93.400 kb on + strand, within SGL_RS00445 at 93.402 kb on + strand, within SGL_RS00445 at 93.435 kb on - strand, within SGL_RS00445 at 93.810 kb on + strand, within SGL_RS00450 at 93.900 kb on + strand at 93.962 kb on + strand at 93.967 kb on + strand, within SGL_RS00455 at 94.082 kb on - strand, within SGL_RS00455 at 94.366 kb on - strand, within SGL_RS00455 at 94.368 kb on - strand, within SGL_RS00455 at 94.368 kb on - strand, within SGL_RS00455 at 94.825 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction medium light; bubbling remove 92,866 - SGL_RS00440 0.14 -1.5 92,866 - SGL_RS00440 0.14 -0.7 92,894 - SGL_RS00440 0.21 -1.0 93,051 + SGL_RS00440 0.57 -1.1 93,113 + SGL_RS00440 0.71 -0.8 93,146 - SGL_RS00440 0.79 -0.6 93,170 - SGL_RS00440 0.84 -0.9 93,400 + SGL_RS00445 0.58 +1.8 93,400 + SGL_RS00445 0.58 +1.3 93,402 + SGL_RS00445 0.59 +3.4 93,435 - SGL_RS00445 0.70 +6.0 93,810 + SGL_RS00450 0.73 +1.1 93,900 + +0.5 93,962 + +0.1 93,967 + SGL_RS00455 0.10 -0.4 94,082 - SGL_RS00455 0.22 +0.9 94,366 - SGL_RS00455 0.50 +0.2 94,368 - SGL_RS00455 0.50 +1.1 94,368 - SGL_RS00455 0.50 +0.5 94,825 - +0.9
Or see this region's nucleotide sequence