Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS18925

Experiment: low light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS11190 and SGL_RS19230 are separated by 11 nucleotidesSGL_RS19230 and SGL_RS18925 are separated by 56 nucleotidesSGL_RS18925 and SGL_RS11200 are separated by 220 nucleotides SGL_RS11190: SGL_RS11190 - IS701 family transposase, at 1,972,061 to 1,972,549 _RS11190 SGL_RS19230: SGL_RS19230 - transposase, at 1,972,561 to 1,973,061 _RS19230 SGL_RS18925: SGL_RS18925 - IS1 family transposase, at 1,973,118 to 1,973,390 _RS18925 SGL_RS11200: SGL_RS11200 - alanine--glyoxylate aminotransferase family protein, at 1,973,611 to 1,974,765 _RS11200 Position (kb) 1973 1974Strain fitness (log2 ratio) -1 0 1at 1973.275 kb on - strand, within SGL_RS18925at 1973.297 kb on - strand, within SGL_RS18925at 1973.414 kb on + strandat 1973.472 kb on - strandat 1973.486 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction low light; bubbling
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1,973,275 - SGL_RS18925 0.58 +0.3
1,973,297 - SGL_RS18925 0.66 +0.1
1,973,414 + +0.4
1,973,472 - -0.1
1,973,486 - -0.7

Or see this region's nucleotide sequence