Experiment: low light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS17330 and SGL_RS17335 are separated by 82 nucleotides SGL_RS17335 and SGL_RS17340 are separated by 81 nucleotides SGL_RS17340 and SGL_RS17345 are separated by 92 nucleotides
SGL_RS17330: SGL_RS17330 - biosynthetic arginine decarboxylase, at 3,342,857 to 3,344,944
_RS17330
SGL_RS17335: SGL_RS17335 - hypothetical protein, at 3,345,027 to 3,345,779
_RS17335
SGL_RS17340: SGL_RS17340 - quinolinate synthase NadA, at 3,345,861 to 3,346,817
_RS17340
SGL_RS17345: SGL_RS17345 - cytochrome c biogenesis protein CcdA, at 3,346,910 to 3,347,656
_RS17345
Position (kb)
3345
3346
3347 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 3345.010 kb on - strand at 3345.060 kb on - strand at 3345.078 kb on + strand at 3345.089 kb on + strand at 3345.165 kb on - strand, within SGL_RS17335 at 3345.203 kb on + strand, within SGL_RS17335 at 3345.279 kb on + strand, within SGL_RS17335 at 3345.336 kb on + strand, within SGL_RS17335 at 3345.431 kb on + strand, within SGL_RS17335 at 3345.505 kb on + strand, within SGL_RS17335 at 3345.546 kb on - strand, within SGL_RS17335 at 3345.683 kb on + strand, within SGL_RS17335 at 3345.724 kb on + strand at 3345.757 kb on + strand at 3345.814 kb on + strand at 3345.867 kb on - strand at 3345.867 kb on - strand at 3346.625 kb on + strand, within SGL_RS17340 at 3346.658 kb on + strand, within SGL_RS17340 at 3346.812 kb on + strand at 3346.899 kb on - strand at 3346.941 kb on - strand at 3346.965 kb on - strand at 3347.417 kb on + strand, within SGL_RS17345 at 3347.425 kb on - strand, within SGL_RS17345 at 3347.564 kb on + strand, within SGL_RS17345 at 3347.654 kb on - strand at 3347.767 kb on + strand at 3347.799 kb on - strand at 3347.811 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction low light; bubbling remove 3,345,010 - +0.0 3,345,060 - -2.2 3,345,078 + -0.1 3,345,089 + -1.5 3,345,165 - SGL_RS17335 0.18 -0.9 3,345,203 + SGL_RS17335 0.23 -0.1 3,345,279 + SGL_RS17335 0.33 -1.1 3,345,336 + SGL_RS17335 0.41 -0.1 3,345,431 + SGL_RS17335 0.54 -0.2 3,345,505 + SGL_RS17335 0.63 -0.0 3,345,546 - SGL_RS17335 0.69 -0.1 3,345,683 + SGL_RS17335 0.87 +0.1 3,345,724 + +0.2 3,345,757 + -0.4 3,345,814 + +0.2 3,345,867 - +0.1 3,345,867 - -0.2 3,346,625 + SGL_RS17340 0.80 -2.2 3,346,658 + SGL_RS17340 0.83 -5.8 3,346,812 + -6.2 3,346,899 - -0.6 3,346,941 - +0.1 3,346,965 - -1.9 3,347,417 + SGL_RS17345 0.68 -1.9 3,347,425 - SGL_RS17345 0.69 -3.2 3,347,564 + SGL_RS17345 0.88 -2.7 3,347,654 - -2.2 3,347,767 + +0.7 3,347,799 - -1.8 3,347,811 + -0.0
Or see this region's nucleotide sequence