Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS15130

Experiment: low light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS15125 and SGL_RS15130 are separated by 30 nucleotidesSGL_RS15130 and SGL_RS15135 are separated by 66 nucleotidesSGL_RS15135 and SGL_RS15140 are separated by 107 nucleotides SGL_RS15125: SGL_RS15125 - MoxR family ATPase, at 2,842,772 to 2,843,683 _RS15125 SGL_RS15130: SGL_RS15130 - dTDP-glucose 4,6-dehydratase, at 2,843,714 to 2,844,742 _RS15130 SGL_RS15135: SGL_RS15135 - hypothetical protein, at 2,844,809 to 2,845,072 _RS15135 SGL_RS15140: SGL_RS15140 - elongation factor G, at 2,845,180 to 2,847,189 _RS15140 Position (kb) 2843 2844 2845Strain fitness (log2 ratio) -9 -8 -7 -6 -5 -4 -3 -2 -1 0 1at 2842.722 kb on - strandat 2842.822 kb on + strandat 2842.836 kb on - strandat 2842.861 kb on + strandat 2842.878 kb on - strand, within SGL_RS15125at 2842.890 kb on - strand, within SGL_RS15125at 2842.969 kb on - strand, within SGL_RS15125at 2843.213 kb on + strand, within SGL_RS15125at 2843.336 kb on - strand, within SGL_RS15125at 2843.441 kb on + strand, within SGL_RS15125at 2843.441 kb on + strand, within SGL_RS15125at 2843.449 kb on - strand, within SGL_RS15125at 2843.449 kb on - strand, within SGL_RS15125at 2843.451 kb on - strand, within SGL_RS15125at 2843.490 kb on + strand, within SGL_RS15125at 2843.511 kb on - strand, within SGL_RS15125at 2843.534 kb on + strand, within SGL_RS15125at 2843.609 kb on - strandat 2843.768 kb on - strandat 2844.027 kb on - strand, within SGL_RS15130at 2844.089 kb on + strand, within SGL_RS15130at 2844.187 kb on - strand, within SGL_RS15130at 2844.331 kb on + strand, within SGL_RS15130at 2844.409 kb on + strand, within SGL_RS15130at 2844.419 kb on + strand, within SGL_RS15130at 2844.451 kb on - strand, within SGL_RS15130at 2844.466 kb on - strand, within SGL_RS15130at 2844.649 kb on - strandat 2844.662 kb on - strandat 2844.728 kb on - strandat 2844.732 kb on + strandat 2844.889 kb on - strand, within SGL_RS15135at 2844.908 kb on + strand, within SGL_RS15135at 2844.993 kb on + strand, within SGL_RS15135at 2845.109 kb on - strandat 2845.228 kb on - strandat 2845.252 kb on - strandat 2845.512 kb on + strand, within SGL_RS15140at 2845.520 kb on - strand, within SGL_RS15140at 2845.524 kb on + strand, within SGL_RS15140at 2845.576 kb on + strand, within SGL_RS15140at 2845.584 kb on - strand, within SGL_RS15140at 2845.589 kb on - strand, within SGL_RS15140at 2845.686 kb on + strand, within SGL_RS15140at 2845.723 kb on + strand, within SGL_RS15140

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Per-strain Table

Position Strand Gene LocusTag Fraction low light; bubbling
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2,842,722 - +0.4
2,842,822 + -0.2
2,842,836 - -1.1
2,842,861 + -0.4
2,842,878 - SGL_RS15125 0.12 -1.3
2,842,890 - SGL_RS15125 0.13 -1.9
2,842,969 - SGL_RS15125 0.22 -3.0
2,843,213 + SGL_RS15125 0.48 -0.6
2,843,336 - SGL_RS15125 0.62 -0.4
2,843,441 + SGL_RS15125 0.73 +0.1
2,843,441 + SGL_RS15125 0.73 -1.4
2,843,449 - SGL_RS15125 0.74 -2.6
2,843,449 - SGL_RS15125 0.74 -1.8
2,843,451 - SGL_RS15125 0.74 -0.4
2,843,490 + SGL_RS15125 0.79 +0.7
2,843,511 - SGL_RS15125 0.81 -0.9
2,843,534 + SGL_RS15125 0.84 +0.1
2,843,609 - -1.1
2,843,768 - -7.0
2,844,027 - SGL_RS15130 0.30 -7.0
2,844,089 + SGL_RS15130 0.36 -8.8
2,844,187 - SGL_RS15130 0.46 -7.5
2,844,331 + SGL_RS15130 0.60 -6.8
2,844,409 + SGL_RS15130 0.68 -5.6
2,844,419 + SGL_RS15130 0.69 -6.8
2,844,451 - SGL_RS15130 0.72 -7.8
2,844,466 - SGL_RS15130 0.73 -6.2
2,844,649 - -6.7
2,844,662 - -7.5
2,844,728 - -0.1
2,844,732 + +0.2
2,844,889 - SGL_RS15135 0.30 +0.6
2,844,908 + SGL_RS15135 0.38 -0.4
2,844,993 + SGL_RS15135 0.70 +0.2
2,845,109 - +0.3
2,845,228 - +0.5
2,845,252 - -0.7
2,845,512 + SGL_RS15140 0.17 +1.1
2,845,520 - SGL_RS15140 0.17 -1.1
2,845,524 + SGL_RS15140 0.17 -2.4
2,845,576 + SGL_RS15140 0.20 -0.5
2,845,584 - SGL_RS15140 0.20 +0.1
2,845,589 - SGL_RS15140 0.20 +0.1
2,845,686 + SGL_RS15140 0.25 +0.0
2,845,723 + SGL_RS15140 0.27 -0.3

Or see this region's nucleotide sequence