Experiment: low light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS14280 and SGL_RS19475 are separated by 225 nucleotides SGL_RS19475 and SGL_RS14285 are separated by 54 nucleotides SGL_RS14285 and SGL_RS14290 are separated by 45 nucleotides SGL_RS14290 and SGL_RS14295 are separated by 49 nucleotides
SGL_RS14280: SGL_RS14280 - adenosylcobinamide-GDP ribazoletransferase, at 2,657,850 to 2,658,632
_RS14280
SGL_RS19475: SGL_RS19475 - hypothetical protein, at 2,658,858 to 2,659,025
_RS19475
SGL_RS14285: SGL_RS14285 - hypothetical protein, at 2,659,080 to 2,659,865
_RS14285
SGL_RS14290: SGL_RS14290 - glycine--tRNA ligase subunit alpha, at 2,659,911 to 2,660,804
_RS14290
SGL_RS14295: SGL_RS14295 - mechanosensitive ion channel, at 2,660,854 to 2,661,744
_RS14295
Position (kb)
2659
2660 Strain fitness (log2 ratio)
-7
-6
-5
-4
-3
-2
-1
0
1 at 2658.118 kb on + strand, within SGL_RS14280 at 2658.197 kb on + strand, within SGL_RS14280 at 2658.324 kb on + strand, within SGL_RS14280 at 2658.332 kb on - strand, within SGL_RS14280 at 2658.510 kb on + strand, within SGL_RS14280 at 2658.696 kb on - strand at 2658.815 kb on - strand at 2658.816 kb on - strand at 2658.982 kb on + strand, within SGL_RS19475 at 2658.990 kb on - strand, within SGL_RS19475 at 2659.347 kb on + strand, within SGL_RS14285 at 2659.498 kb on - strand, within SGL_RS14285 at 2659.539 kb on + strand, within SGL_RS14285 at 2659.701 kb on - strand, within SGL_RS14285 at 2659.753 kb on + strand, within SGL_RS14285 at 2660.185 kb on + strand, within SGL_RS14290
Per-strain Table
Position Strand Gene LocusTag Fraction low light; bubbling remove 2,658,118 + SGL_RS14280 0.34 -0.7 2,658,197 + SGL_RS14280 0.44 -2.1 2,658,324 + SGL_RS14280 0.61 -1.3 2,658,332 - SGL_RS14280 0.62 -1.7 2,658,510 + SGL_RS14280 0.84 -1.7 2,658,696 - +0.3 2,658,815 - -0.1 2,658,816 - -0.3 2,658,982 + SGL_RS19475 0.74 -2.7 2,658,990 - SGL_RS19475 0.79 -6.8 2,659,347 + SGL_RS14285 0.34 -1.3 2,659,498 - SGL_RS14285 0.53 -1.3 2,659,539 + SGL_RS14285 0.58 -4.9 2,659,701 - SGL_RS14285 0.79 -3.2 2,659,753 + SGL_RS14285 0.86 -4.9 2,660,185 + SGL_RS14290 0.31 -3.1
Or see this region's nucleotide sequence