Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS10255

Experiment: low light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS10250 and SGL_RS10255 are separated by 213 nucleotidesSGL_RS10255 and SGL_RS10260 are separated by 148 nucleotides SGL_RS10250: SGL_RS10250 - imidazole glycerol phosphate synthase subunit HisF, at 1,771,458 to 1,772,243 _RS10250 SGL_RS10255: SGL_RS10255 - hypothetical protein, at 1,772,457 to 1,773,203 _RS10255 SGL_RS10260: SGL_RS10260 - CHAT domain-containing protein, at 1,773,352 to 1,776,150 _RS10260 Position (kb) 1772 1773 1774Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1772.207 kb on + strandat 1772.420 kb on + strandat 1772.512 kb on + strandat 1772.607 kb on - strand, within SGL_RS10255at 1772.761 kb on - strand, within SGL_RS10255at 1772.808 kb on + strand, within SGL_RS10255at 1772.808 kb on + strand, within SGL_RS10255at 1772.826 kb on - strand, within SGL_RS10255at 1772.853 kb on + strand, within SGL_RS10255at 1772.856 kb on - strand, within SGL_RS10255at 1773.098 kb on - strand, within SGL_RS10255at 1773.538 kb on + strandat 1773.668 kb on - strand, within SGL_RS10260at 1773.747 kb on + strand, within SGL_RS10260at 1773.946 kb on + strand, within SGL_RS10260at 1773.946 kb on + strand, within SGL_RS10260at 1774.131 kb on + strand, within SGL_RS10260

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Per-strain Table

Position Strand Gene LocusTag Fraction low light; bubbling
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1,772,207 + -2.8
1,772,420 + -6.4
1,772,512 + -4.2
1,772,607 - SGL_RS10255 0.20 -1.9
1,772,761 - SGL_RS10255 0.41 -3.4
1,772,808 + SGL_RS10255 0.47 -4.0
1,772,808 + SGL_RS10255 0.47 -4.2
1,772,826 - SGL_RS10255 0.49 -3.5
1,772,853 + SGL_RS10255 0.53 -3.8
1,772,856 - SGL_RS10255 0.53 -0.8
1,773,098 - SGL_RS10255 0.86 -4.0
1,773,538 + -0.3
1,773,668 - SGL_RS10260 0.11 -1.1
1,773,747 + SGL_RS10260 0.14 +0.6
1,773,946 + SGL_RS10260 0.21 +0.7
1,773,946 + SGL_RS10260 0.21 -0.1
1,774,131 + SGL_RS10260 0.28 +0.3

Or see this region's nucleotide sequence