Experiment: low light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS10155 and SGL_RS10160 are separated by 64 nucleotides SGL_RS10160 and SGL_RS10165 are separated by 132 nucleotides
SGL_RS10155: SGL_RS10155 - hypothetical protein, at 1,751,951 to 1,752,826
_RS10155
SGL_RS10160: SGL_RS10160 - B12-binding domain-containing radical SAM protein, at 1,752,891 to 1,754,501
_RS10160
SGL_RS10165: SGL_RS10165 - tetratricopeptide repeat protein, at 1,754,634 to 1,755,152
_RS10165
Position (kb)
1752
1753
1754
1755 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 1751.936 kb on + strand at 1752.017 kb on - strand at 1752.045 kb on - strand, within SGL_RS10155 at 1752.330 kb on + strand, within SGL_RS10155 at 1752.424 kb on - strand, within SGL_RS10155 at 1752.435 kb on + strand, within SGL_RS10155 at 1752.451 kb on + strand, within SGL_RS10155 at 1752.461 kb on - strand, within SGL_RS10155 at 1752.461 kb on - strand, within SGL_RS10155 at 1752.692 kb on + strand, within SGL_RS10155 at 1752.710 kb on - strand, within SGL_RS10155 at 1752.948 kb on + strand at 1752.963 kb on - strand at 1753.034 kb on - strand at 1753.424 kb on - strand, within SGL_RS10160 at 1753.426 kb on + strand, within SGL_RS10160 at 1753.434 kb on - strand, within SGL_RS10160 at 1753.439 kb on - strand, within SGL_RS10160 at 1753.479 kb on - strand, within SGL_RS10160 at 1753.929 kb on + strand, within SGL_RS10160 at 1754.075 kb on + strand, within SGL_RS10160 at 1754.075 kb on + strand, within SGL_RS10160 at 1754.124 kb on - strand, within SGL_RS10160 at 1754.126 kb on + strand, within SGL_RS10160 at 1754.339 kb on - strand, within SGL_RS10160 at 1754.339 kb on - strand, within SGL_RS10160 at 1754.407 kb on - strand at 1754.484 kb on + strand at 1754.528 kb on - strand at 1754.637 kb on - strand at 1754.660 kb on - strand at 1754.775 kb on + strand, within SGL_RS10165 at 1754.908 kb on + strand, within SGL_RS10165 at 1754.916 kb on - strand, within SGL_RS10165 at 1754.926 kb on - strand, within SGL_RS10165 at 1754.935 kb on + strand, within SGL_RS10165 at 1754.943 kb on - strand, within SGL_RS10165 at 1754.965 kb on + strand, within SGL_RS10165 at 1754.972 kb on - strand, within SGL_RS10165 at 1754.973 kb on - strand, within SGL_RS10165 at 1755.074 kb on - strand, within SGL_RS10165 at 1755.131 kb on - strand at 1755.134 kb on - strand at 1755.145 kb on - strand at 1755.327 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction low light; bubbling remove 1,751,936 + -0.8 1,752,017 - -2.6 1,752,045 - SGL_RS10155 0.11 -0.8 1,752,330 + SGL_RS10155 0.43 -1.2 1,752,424 - SGL_RS10155 0.54 -2.6 1,752,435 + SGL_RS10155 0.55 -2.1 1,752,451 + SGL_RS10155 0.57 -1.8 1,752,461 - SGL_RS10155 0.58 -1.8 1,752,461 - SGL_RS10155 0.58 -3.7 1,752,692 + SGL_RS10155 0.85 -4.1 1,752,710 - SGL_RS10155 0.87 -4.2 1,752,948 + -1.8 1,752,963 - -1.6 1,753,034 - -2.6 1,753,424 - SGL_RS10160 0.33 -3.2 1,753,426 + SGL_RS10160 0.33 -1.8 1,753,434 - SGL_RS10160 0.34 -2.0 1,753,439 - SGL_RS10160 0.34 -5.4 1,753,479 - SGL_RS10160 0.36 -4.0 1,753,929 + SGL_RS10160 0.64 -1.3 1,754,075 + SGL_RS10160 0.73 -4.9 1,754,075 + SGL_RS10160 0.73 -2.4 1,754,124 - SGL_RS10160 0.77 -3.0 1,754,126 + SGL_RS10160 0.77 -4.8 1,754,339 - SGL_RS10160 0.90 -2.7 1,754,339 - SGL_RS10160 0.90 -4.0 1,754,407 - -4.7 1,754,484 + -3.9 1,754,528 - -5.2 1,754,637 - +0.1 1,754,660 - -0.2 1,754,775 + SGL_RS10165 0.27 +0.2 1,754,908 + SGL_RS10165 0.53 +0.4 1,754,916 - SGL_RS10165 0.54 -0.0 1,754,926 - SGL_RS10165 0.56 +1.6 1,754,935 + SGL_RS10165 0.58 +1.0 1,754,943 - SGL_RS10165 0.60 -0.4 1,754,965 + SGL_RS10165 0.64 -0.3 1,754,972 - SGL_RS10165 0.65 +0.3 1,754,973 - SGL_RS10165 0.65 +0.1 1,755,074 - SGL_RS10165 0.85 +0.3 1,755,131 - -0.1 1,755,134 - +0.4 1,755,145 - +0.4 1,755,327 - +0.3
Or see this region's nucleotide sequence