Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS10160

Experiment: low light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS10155 and SGL_RS10160 are separated by 64 nucleotidesSGL_RS10160 and SGL_RS10165 are separated by 132 nucleotides SGL_RS10155: SGL_RS10155 - hypothetical protein, at 1,751,951 to 1,752,826 _RS10155 SGL_RS10160: SGL_RS10160 - B12-binding domain-containing radical SAM protein, at 1,752,891 to 1,754,501 _RS10160 SGL_RS10165: SGL_RS10165 - tetratricopeptide repeat protein, at 1,754,634 to 1,755,152 _RS10165 Position (kb) 1752 1753 1754 1755Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1751.936 kb on + strandat 1752.017 kb on - strandat 1752.045 kb on - strand, within SGL_RS10155at 1752.330 kb on + strand, within SGL_RS10155at 1752.424 kb on - strand, within SGL_RS10155at 1752.435 kb on + strand, within SGL_RS10155at 1752.451 kb on + strand, within SGL_RS10155at 1752.461 kb on - strand, within SGL_RS10155at 1752.461 kb on - strand, within SGL_RS10155at 1752.692 kb on + strand, within SGL_RS10155at 1752.710 kb on - strand, within SGL_RS10155at 1752.948 kb on + strandat 1752.963 kb on - strandat 1753.034 kb on - strandat 1753.424 kb on - strand, within SGL_RS10160at 1753.426 kb on + strand, within SGL_RS10160at 1753.434 kb on - strand, within SGL_RS10160at 1753.439 kb on - strand, within SGL_RS10160at 1753.479 kb on - strand, within SGL_RS10160at 1753.929 kb on + strand, within SGL_RS10160at 1754.075 kb on + strand, within SGL_RS10160at 1754.075 kb on + strand, within SGL_RS10160at 1754.124 kb on - strand, within SGL_RS10160at 1754.126 kb on + strand, within SGL_RS10160at 1754.339 kb on - strand, within SGL_RS10160at 1754.339 kb on - strand, within SGL_RS10160at 1754.407 kb on - strandat 1754.484 kb on + strandat 1754.528 kb on - strandat 1754.637 kb on - strandat 1754.660 kb on - strandat 1754.775 kb on + strand, within SGL_RS10165at 1754.908 kb on + strand, within SGL_RS10165at 1754.916 kb on - strand, within SGL_RS10165at 1754.926 kb on - strand, within SGL_RS10165at 1754.935 kb on + strand, within SGL_RS10165at 1754.943 kb on - strand, within SGL_RS10165at 1754.965 kb on + strand, within SGL_RS10165at 1754.972 kb on - strand, within SGL_RS10165at 1754.973 kb on - strand, within SGL_RS10165at 1755.074 kb on - strand, within SGL_RS10165at 1755.131 kb on - strandat 1755.134 kb on - strandat 1755.145 kb on - strandat 1755.327 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction low light; bubbling
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1,751,936 + -0.8
1,752,017 - -2.6
1,752,045 - SGL_RS10155 0.11 -0.8
1,752,330 + SGL_RS10155 0.43 -1.2
1,752,424 - SGL_RS10155 0.54 -2.6
1,752,435 + SGL_RS10155 0.55 -2.1
1,752,451 + SGL_RS10155 0.57 -1.8
1,752,461 - SGL_RS10155 0.58 -1.8
1,752,461 - SGL_RS10155 0.58 -3.7
1,752,692 + SGL_RS10155 0.85 -4.1
1,752,710 - SGL_RS10155 0.87 -4.2
1,752,948 + -1.8
1,752,963 - -1.6
1,753,034 - -2.6
1,753,424 - SGL_RS10160 0.33 -3.2
1,753,426 + SGL_RS10160 0.33 -1.8
1,753,434 - SGL_RS10160 0.34 -2.0
1,753,439 - SGL_RS10160 0.34 -5.4
1,753,479 - SGL_RS10160 0.36 -4.0
1,753,929 + SGL_RS10160 0.64 -1.3
1,754,075 + SGL_RS10160 0.73 -4.9
1,754,075 + SGL_RS10160 0.73 -2.4
1,754,124 - SGL_RS10160 0.77 -3.0
1,754,126 + SGL_RS10160 0.77 -4.8
1,754,339 - SGL_RS10160 0.90 -2.7
1,754,339 - SGL_RS10160 0.90 -4.0
1,754,407 - -4.7
1,754,484 + -3.9
1,754,528 - -5.2
1,754,637 - +0.1
1,754,660 - -0.2
1,754,775 + SGL_RS10165 0.27 +0.2
1,754,908 + SGL_RS10165 0.53 +0.4
1,754,916 - SGL_RS10165 0.54 -0.0
1,754,926 - SGL_RS10165 0.56 +1.6
1,754,935 + SGL_RS10165 0.58 +1.0
1,754,943 - SGL_RS10165 0.60 -0.4
1,754,965 + SGL_RS10165 0.64 -0.3
1,754,972 - SGL_RS10165 0.65 +0.3
1,754,973 - SGL_RS10165 0.65 +0.1
1,755,074 - SGL_RS10165 0.85 +0.3
1,755,131 - -0.1
1,755,134 - +0.4
1,755,145 - +0.4
1,755,327 - +0.3

Or see this region's nucleotide sequence