Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS08035

Experiment: low light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS08030 and SGL_RS08035 are separated by 57 nucleotidesSGL_RS08035 and SGL_RS08040 are separated by 248 nucleotides SGL_RS08030: SGL_RS08030 - glucose-6-phosphate dehydrogenase assembly protein OpcA, at 1,316,227 to 1,317,654 _RS08030 SGL_RS08035: SGL_RS08035 - amino acid ABC transporter ATP-binding protein, at 1,317,712 to 1,318,470 _RS08035 SGL_RS08040: SGL_RS08040 - transcriptional repressor LexA, at 1,318,719 to 1,319,330 _RS08040 Position (kb) 1317 1318 1319Strain fitness (log2 ratio) -2 -1 0 1at 1316.746 kb on - strand, within SGL_RS08030at 1316.784 kb on - strand, within SGL_RS08030at 1316.919 kb on - strand, within SGL_RS08030at 1316.970 kb on + strand, within SGL_RS08030at 1317.112 kb on - strand, within SGL_RS08030at 1317.137 kb on + strand, within SGL_RS08030at 1317.292 kb on - strand, within SGL_RS08030at 1317.318 kb on - strand, within SGL_RS08030at 1317.369 kb on + strand, within SGL_RS08030at 1317.374 kb on + strand, within SGL_RS08030at 1317.412 kb on - strand, within SGL_RS08030at 1317.412 kb on - strand, within SGL_RS08030at 1317.417 kb on - strand, within SGL_RS08030at 1317.605 kb on + strandat 1317.692 kb on + strandat 1318.054 kb on + strand, within SGL_RS08035at 1318.168 kb on - strand, within SGL_RS08035at 1318.177 kb on + strand, within SGL_RS08035at 1318.235 kb on - strand, within SGL_RS08035at 1318.262 kb on - strand, within SGL_RS08035at 1318.384 kb on + strand, within SGL_RS08035at 1318.628 kb on + strandat 1318.837 kb on - strand, within SGL_RS08040at 1319.135 kb on - strand, within SGL_RS08040at 1319.337 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction low light; bubbling
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1,316,746 - SGL_RS08030 0.36 +0.4
1,316,784 - SGL_RS08030 0.39 -1.4
1,316,919 - SGL_RS08030 0.48 -1.2
1,316,970 + SGL_RS08030 0.52 -0.1
1,317,112 - SGL_RS08030 0.62 +0.2
1,317,137 + SGL_RS08030 0.64 -0.4
1,317,292 - SGL_RS08030 0.75 +0.7
1,317,318 - SGL_RS08030 0.76 +0.0
1,317,369 + SGL_RS08030 0.80 -0.3
1,317,374 + SGL_RS08030 0.80 -0.5
1,317,412 - SGL_RS08030 0.83 -0.3
1,317,412 - SGL_RS08030 0.83 -0.9
1,317,417 - SGL_RS08030 0.83 -0.1
1,317,605 + -0.3
1,317,692 + -2.6
1,318,054 + SGL_RS08035 0.45 -0.3
1,318,168 - SGL_RS08035 0.60 -1.4
1,318,177 + SGL_RS08035 0.61 -1.7
1,318,235 - SGL_RS08035 0.69 -0.0
1,318,262 - SGL_RS08035 0.72 -0.5
1,318,384 + SGL_RS08035 0.89 -1.5
1,318,628 + +0.4
1,318,837 - SGL_RS08040 0.19 -2.7
1,319,135 - SGL_RS08040 0.68 -2.7
1,319,337 - -2.5

Or see this region's nucleotide sequence