Experiment: low light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS03840 and SGL_RS03845 are separated by 157 nucleotides SGL_RS03845 and SGL_RS03850 are separated by 110 nucleotides SGL_RS03850 and SGL_RS03855 are separated by 35 nucleotides
SGL_RS03840: SGL_RS03840 - adenylyl-sulfate kinase, at 414,871 to 415,404
_RS03840
SGL_RS03845: SGL_RS03845 - MotA/TolQ/ExbB proton channel family protein, at 415,562 to 416,245
_RS03845
SGL_RS03850: SGL_RS03850 - biopolymer transporter ExbD, at 416,356 to 417,165
_RS03850
SGL_RS03855: SGL_RS03855 - 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB, at 417,201 to 418,541
_RS03855
Position (kb) 416
417
418 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 415.418 kb on - strand at 415.418 kb on - strand at 415.726 kb on + strand, within SGL_RS03845 at 415.838 kb on + strand, within SGL_RS03845 at 415.910 kb on + strand, within SGL_RS03845 at 415.913 kb on - strand, within SGL_RS03845 at 415.939 kb on - strand, within SGL_RS03845 at 416.033 kb on + strand, within SGL_RS03845 at 416.038 kb on + strand, within SGL_RS03845 at 416.103 kb on + strand, within SGL_RS03845 at 416.430 kb on - strand at 416.897 kb on + strand, within SGL_RS03850 at 416.900 kb on - strand, within SGL_RS03850 at 416.902 kb on + strand, within SGL_RS03850 at 416.935 kb on - strand, within SGL_RS03850 at 417.016 kb on + strand, within SGL_RS03850 at 417.063 kb on - strand, within SGL_RS03850 at 417.160 kb on - strand at 417.273 kb on + strand at 417.356 kb on - strand, within SGL_RS03855 at 417.474 kb on - strand, within SGL_RS03855 at 417.474 kb on - strand, within SGL_RS03855 at 417.536 kb on - strand, within SGL_RS03855 at 417.545 kb on - strand, within SGL_RS03855 at 417.595 kb on - strand, within SGL_RS03855 at 417.753 kb on - strand, within SGL_RS03855 at 417.777 kb on - strand, within SGL_RS03855 at 417.777 kb on - strand, within SGL_RS03855 at 417.780 kb on + strand, within SGL_RS03855 at 417.780 kb on + strand, within SGL_RS03855 at 417.788 kb on - strand, within SGL_RS03855 at 417.795 kb on - strand, within SGL_RS03855 at 417.838 kb on + strand, within SGL_RS03855 at 417.838 kb on + strand, within SGL_RS03855 at 417.838 kb on + strand, within SGL_RS03855 at 417.846 kb on - strand, within SGL_RS03855 at 417.906 kb on + strand, within SGL_RS03855 at 417.914 kb on - strand, within SGL_RS03855 at 417.941 kb on - strand, within SGL_RS03855 at 418.001 kb on + strand, within SGL_RS03855
Per-strain Table
Position Strand Gene LocusTag Fraction low light; bubbling remove 415,418 - -2.5 415,418 - -4.7 415,726 + SGL_RS03845 0.24 -4.3 415,838 + SGL_RS03845 0.40 -5.5 415,910 + SGL_RS03845 0.51 -4.5 415,913 - SGL_RS03845 0.51 -4.4 415,939 - SGL_RS03845 0.55 -4.8 416,033 + SGL_RS03845 0.69 -4.8 416,038 + SGL_RS03845 0.70 -6.2 416,103 + SGL_RS03845 0.79 -6.0 416,430 - -2.6 416,897 + SGL_RS03850 0.67 -6.4 416,900 - SGL_RS03850 0.67 -5.5 416,902 + SGL_RS03850 0.67 -1.3 416,935 - SGL_RS03850 0.71 -4.1 417,016 + SGL_RS03850 0.81 -5.1 417,063 - SGL_RS03850 0.87 -5.3 417,160 - -0.5 417,273 + +1.0 417,356 - SGL_RS03855 0.12 +0.2 417,474 - SGL_RS03855 0.20 +0.4 417,474 - SGL_RS03855 0.20 -0.2 417,536 - SGL_RS03855 0.25 +0.3 417,545 - SGL_RS03855 0.26 +0.7 417,595 - SGL_RS03855 0.29 +0.1 417,753 - SGL_RS03855 0.41 +0.5 417,777 - SGL_RS03855 0.43 +0.6 417,777 - SGL_RS03855 0.43 +0.4 417,780 + SGL_RS03855 0.43 +0.8 417,780 + SGL_RS03855 0.43 +0.0 417,788 - SGL_RS03855 0.44 -0.8 417,795 - SGL_RS03855 0.44 +0.9 417,838 + SGL_RS03855 0.48 +0.6 417,838 + SGL_RS03855 0.48 +1.1 417,838 + SGL_RS03855 0.48 +0.3 417,846 - SGL_RS03855 0.48 +0.5 417,906 + SGL_RS03855 0.53 +2.3 417,914 - SGL_RS03855 0.53 -0.0 417,941 - SGL_RS03855 0.55 +0.0 418,001 + SGL_RS03855 0.60 +0.6
Or see this region's nucleotide sequence