Experiment: low light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS02490 and SGL_RS02495 are separated by 49 nucleotides SGL_RS02495 and SGL_RS02500 are separated by 115 nucleotides SGL_RS02500 and SGL_RS02505 are separated by 219 nucleotides
SGL_RS02490: SGL_RS02490 - glycogen debranching protein GlgX, at 138,295 to 140,535
_RS02490
SGL_RS02495: SGL_RS02495 - hypothetical protein, at 140,585 to 141,007
_RS02495
SGL_RS02500: SGL_RS02500 - transposase, at 141,123 to 141,428
_RS02500
SGL_RS02505: SGL_RS02505 - precorrin-4 C(11)-methyltransferase, at 141,648 to 142,442
_RS02505
Position (kb) 141
142 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 140.178 kb on + strand, within SGL_RS02490 at 140.234 kb on + strand, within SGL_RS02490 at 140.250 kb on - strand, within SGL_RS02490 at 140.258 kb on + strand, within SGL_RS02490 at 140.277 kb on + strand, within SGL_RS02490 at 140.277 kb on + strand, within SGL_RS02490 at 140.277 kb on + strand, within SGL_RS02490 at 140.285 kb on - strand, within SGL_RS02490 at 140.285 kb on - strand, within SGL_RS02490 at 140.295 kb on - strand, within SGL_RS02490 at 140.647 kb on + strand, within SGL_RS02495 at 140.739 kb on - strand, within SGL_RS02495 at 141.359 kb on - strand, within SGL_RS02500 at 141.365 kb on - strand, within SGL_RS02500 at 141.377 kb on + strand, within SGL_RS02500 at 141.814 kb on - strand, within SGL_RS02505 at 142.158 kb on + strand, within SGL_RS02505 at 142.166 kb on - strand, within SGL_RS02505 at 142.251 kb on - strand, within SGL_RS02505 at 142.336 kb on + strand, within SGL_RS02505 at 142.420 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction low light; bubbling remove 140,178 + SGL_RS02490 0.84 +0.2 140,234 + SGL_RS02490 0.87 +0.6 140,250 - SGL_RS02490 0.87 -0.8 140,258 + SGL_RS02490 0.88 -0.7 140,277 + SGL_RS02490 0.88 +0.3 140,277 + SGL_RS02490 0.88 -0.9 140,277 + SGL_RS02490 0.88 -0.2 140,285 - SGL_RS02490 0.89 +0.6 140,285 - SGL_RS02490 0.89 +0.1 140,295 - SGL_RS02490 0.89 +0.4 140,647 + SGL_RS02495 0.15 +1.1 140,739 - SGL_RS02495 0.36 +0.1 141,359 - SGL_RS02500 0.77 +0.6 141,365 - SGL_RS02500 0.79 +0.4 141,377 + SGL_RS02500 0.83 +0.0 141,814 - SGL_RS02505 0.21 -2.2 142,158 + SGL_RS02505 0.64 -2.5 142,166 - SGL_RS02505 0.65 +0.1 142,251 - SGL_RS02505 0.76 -3.2 142,336 + SGL_RS02505 0.87 -3.3 142,420 + +0.2
Or see this region's nucleotide sequence