Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS00225

Experiment: low light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS00220 and SGL_RS00225 are separated by 2 nucleotidesSGL_RS00225 and SGL_RS00230 are separated by 201 nucleotidesSGL_RS00230 and SGL_RS00235 are separated by 11 nucleotides SGL_RS00220: SGL_RS00220 - oligosaccharide flippase family protein, at 46,945 to 48,288 _RS00220 SGL_RS00225: SGL_RS00225 - glycosyltransferase, at 48,291 to 49,505 _RS00225 SGL_RS00230: SGL_RS00230 - hypothetical protein, at 49,707 to 50,099 _RS00230 SGL_RS00235: SGL_RS00235 - cellulose synthase operon protein YhjQ/BcsQ, at 50,111 to 52,333 _RS00235 Position (kb) 48 49 50Strain fitness (log2 ratio) -8 -7 -6 -5 -4 -3 -2 -1 0 1at 47.305 kb on + strand, within SGL_RS00220at 47.366 kb on - strand, within SGL_RS00220at 47.378 kb on + strand, within SGL_RS00220at 47.378 kb on + strand, within SGL_RS00220at 47.378 kb on + strand, within SGL_RS00220at 47.439 kb on + strand, within SGL_RS00220at 47.457 kb on - strand, within SGL_RS00220at 47.479 kb on + strand, within SGL_RS00220at 47.511 kb on - strand, within SGL_RS00220at 47.518 kb on + strand, within SGL_RS00220at 47.532 kb on + strand, within SGL_RS00220at 47.532 kb on + strand, within SGL_RS00220at 47.540 kb on - strand, within SGL_RS00220at 47.554 kb on - strand, within SGL_RS00220at 47.625 kb on - strand, within SGL_RS00220at 47.817 kb on + strand, within SGL_RS00220at 47.852 kb on + strand, within SGL_RS00220at 47.905 kb on - strand, within SGL_RS00220at 48.012 kb on + strand, within SGL_RS00220at 48.012 kb on + strand, within SGL_RS00220at 48.020 kb on - strand, within SGL_RS00220at 48.027 kb on - strand, within SGL_RS00220at 48.045 kb on - strand, within SGL_RS00220at 48.140 kb on + strand, within SGL_RS00220at 48.159 kb on + strandat 48.376 kb on - strandat 48.394 kb on + strandat 48.416 kb on + strand, within SGL_RS00225at 48.425 kb on - strand, within SGL_RS00225at 48.451 kb on + strand, within SGL_RS00225at 48.459 kb on - strand, within SGL_RS00225at 48.465 kb on - strand, within SGL_RS00225at 48.467 kb on + strand, within SGL_RS00225at 48.493 kb on - strand, within SGL_RS00225at 48.500 kb on + strand, within SGL_RS00225at 48.508 kb on + strand, within SGL_RS00225at 48.531 kb on - strand, within SGL_RS00225at 48.567 kb on - strand, within SGL_RS00225at 48.570 kb on + strand, within SGL_RS00225at 48.676 kb on + strand, within SGL_RS00225at 48.754 kb on + strand, within SGL_RS00225at 48.891 kb on + strand, within SGL_RS00225at 48.927 kb on + strand, within SGL_RS00225at 48.968 kb on - strand, within SGL_RS00225at 49.024 kb on - strand, within SGL_RS00225at 49.078 kb on - strand, within SGL_RS00225at 49.086 kb on + strand, within SGL_RS00225at 49.086 kb on + strand, within SGL_RS00225at 49.086 kb on + strand, within SGL_RS00225at 49.086 kb on + strand, within SGL_RS00225at 49.099 kb on + strand, within SGL_RS00225at 49.210 kb on - strand, within SGL_RS00225at 49.212 kb on + strand, within SGL_RS00225at 49.248 kb on + strand, within SGL_RS00225at 49.248 kb on + strand, within SGL_RS00225at 49.264 kb on - strand, within SGL_RS00225at 49.266 kb on - strand, within SGL_RS00225at 49.296 kb on + strand, within SGL_RS00225at 49.315 kb on - strand, within SGL_RS00225at 49.320 kb on + strand, within SGL_RS00225at 49.328 kb on - strand, within SGL_RS00225at 49.695 kb on + strandat 49.739 kb on - strandat 49.754 kb on + strand, within SGL_RS00230at 49.755 kb on - strand, within SGL_RS00230at 49.864 kb on - strand, within SGL_RS00230at 49.963 kb on - strand, within SGL_RS00230at 50.196 kb on + strandat 50.217 kb on - strandat 50.217 kb on - strandat 50.217 kb on - strandat 50.235 kb on - strandat 50.252 kb on + strandat 50.270 kb on - strandat 50.309 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction low light; bubbling
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47,305 + SGL_RS00220 0.27 -4.9
47,366 - SGL_RS00220 0.31 -7.4
47,378 + SGL_RS00220 0.32 -7.8
47,378 + SGL_RS00220 0.32 -7.5
47,378 + SGL_RS00220 0.32 -7.5
47,439 + SGL_RS00220 0.37 -4.7
47,457 - SGL_RS00220 0.38 -3.8
47,479 + SGL_RS00220 0.40 -7.8
47,511 - SGL_RS00220 0.42 -8.7
47,518 + SGL_RS00220 0.43 -7.6
47,532 + SGL_RS00220 0.44 -5.5
47,532 + SGL_RS00220 0.44 -6.5
47,540 - SGL_RS00220 0.44 -7.3
47,554 - SGL_RS00220 0.45 -8.7
47,625 - SGL_RS00220 0.51 -4.1
47,817 + SGL_RS00220 0.65 -6.2
47,852 + SGL_RS00220 0.67 -5.3
47,905 - SGL_RS00220 0.71 -5.7
48,012 + SGL_RS00220 0.79 -7.6
48,012 + SGL_RS00220 0.79 -8.6
48,020 - SGL_RS00220 0.80 -7.6
48,027 - SGL_RS00220 0.81 -4.9
48,045 - SGL_RS00220 0.82 -7.6
48,140 + SGL_RS00220 0.89 -6.8
48,159 + -7.4
48,376 - -5.2
48,394 + -4.8
48,416 + SGL_RS00225 0.10 -7.6
48,425 - SGL_RS00225 0.11 -6.4
48,451 + SGL_RS00225 0.13 -5.2
48,459 - SGL_RS00225 0.14 -5.9
48,465 - SGL_RS00225 0.14 -7.1
48,467 + SGL_RS00225 0.14 -6.1
48,493 - SGL_RS00225 0.17 -5.0
48,500 + SGL_RS00225 0.17 -6.3
48,508 + SGL_RS00225 0.18 -2.6
48,531 - SGL_RS00225 0.20 -7.5
48,567 - SGL_RS00225 0.23 -7.2
48,570 + SGL_RS00225 0.23 -6.4
48,676 + SGL_RS00225 0.32 -7.2
48,754 + SGL_RS00225 0.38 -4.9
48,891 + SGL_RS00225 0.49 -5.2
48,927 + SGL_RS00225 0.52 -4.8
48,968 - SGL_RS00225 0.56 -5.4
49,024 - SGL_RS00225 0.60 -4.6
49,078 - SGL_RS00225 0.65 -7.2
49,086 + SGL_RS00225 0.65 -8.1
49,086 + SGL_RS00225 0.65 -5.0
49,086 + SGL_RS00225 0.65 -7.3
49,086 + SGL_RS00225 0.65 -4.7
49,099 + SGL_RS00225 0.67 -4.0
49,210 - SGL_RS00225 0.76 -4.8
49,212 + SGL_RS00225 0.76 -0.8
49,248 + SGL_RS00225 0.79 -6.1
49,248 + SGL_RS00225 0.79 -5.2
49,264 - SGL_RS00225 0.80 -7.5
49,266 - SGL_RS00225 0.80 -7.5
49,296 + SGL_RS00225 0.83 -4.3
49,315 - SGL_RS00225 0.84 -6.3
49,320 + SGL_RS00225 0.85 -5.8
49,328 - SGL_RS00225 0.85 -5.3
49,695 + -0.6
49,739 - -0.1
49,754 + SGL_RS00230 0.12 +0.1
49,755 - SGL_RS00230 0.12 -0.8
49,864 - SGL_RS00230 0.40 -0.5
49,963 - SGL_RS00230 0.65 -0.8
50,196 + -1.7
50,217 - -2.8
50,217 - -2.1
50,217 - -3.8
50,235 - -2.0
50,252 + -1.8
50,270 - -2.1
50,309 + -1.2

Or see this region's nucleotide sequence