Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11880

Experiment: no (N) 1 week

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS11875 and SGL_RS11880 overlap by 37 nucleotidesSGL_RS11880 and SGL_RS11885 are separated by 46 nucleotides SGL_RS11875: SGL_RS11875 - aromatic ring-hydroxylating dioxygenase subunit alpha, at 2,118,198 to 2,119,337 _RS11875 SGL_RS11880: SGL_RS11880 - hypothetical protein, at 2,119,301 to 2,120,020 _RS11880 SGL_RS11885: SGL_RS11885 - fatty acid desaturase, at 2,120,067 to 2,121,146 _RS11885 Position (kb) 2119 2120 2121Strain fitness (log2 ratio) -1 0 1at 2118.438 kb on - strand, within SGL_RS11875at 2118.476 kb on + strand, within SGL_RS11875at 2118.607 kb on - strand, within SGL_RS11875at 2118.691 kb on - strand, within SGL_RS11875at 2118.766 kb on + strand, within SGL_RS11875at 2118.832 kb on + strand, within SGL_RS11875at 2119.000 kb on - strand, within SGL_RS11875at 2119.060 kb on + strand, within SGL_RS11875at 2119.218 kb on - strand, within SGL_RS11875at 2119.413 kb on - strand, within SGL_RS11880at 2119.480 kb on + strand, within SGL_RS11880at 2119.488 kb on - strand, within SGL_RS11880at 2119.495 kb on - strand, within SGL_RS11880at 2119.704 kb on - strand, within SGL_RS11880at 2119.722 kb on + strand, within SGL_RS11880at 2119.773 kb on + strand, within SGL_RS11880at 2119.773 kb on + strand, within SGL_RS11880at 2119.781 kb on - strand, within SGL_RS11880at 2119.952 kb on - strandat 2120.087 kb on + strandat 2120.087 kb on - strandat 2120.102 kb on + strandat 2120.382 kb on + strand, within SGL_RS11885at 2120.524 kb on - strand, within SGL_RS11885at 2120.866 kb on + strand, within SGL_RS11885at 2120.881 kb on - strand, within SGL_RS11885at 2120.943 kb on + strand, within SGL_RS11885

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Per-strain Table

Position Strand Gene LocusTag Fraction no (N) 1 week
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2,118,438 - SGL_RS11875 0.21 +0.1
2,118,476 + SGL_RS11875 0.24 +0.1
2,118,607 - SGL_RS11875 0.36 +0.5
2,118,691 - SGL_RS11875 0.43 -0.3
2,118,766 + SGL_RS11875 0.50 +0.1
2,118,832 + SGL_RS11875 0.56 +0.1
2,119,000 - SGL_RS11875 0.70 -0.0
2,119,060 + SGL_RS11875 0.76 -0.2
2,119,218 - SGL_RS11875 0.89 +0.0
2,119,413 - SGL_RS11880 0.16 +0.4
2,119,480 + SGL_RS11880 0.25 +0.2
2,119,488 - SGL_RS11880 0.26 +0.8
2,119,495 - SGL_RS11880 0.27 -0.4
2,119,704 - SGL_RS11880 0.56 +0.4
2,119,722 + SGL_RS11880 0.58 -0.1
2,119,773 + SGL_RS11880 0.66 -0.0
2,119,773 + SGL_RS11880 0.66 +0.6
2,119,781 - SGL_RS11880 0.67 +0.9
2,119,952 - +0.1
2,120,087 + -0.1
2,120,087 - -0.1
2,120,102 + +0.4
2,120,382 + SGL_RS11885 0.29 -1.0
2,120,524 - SGL_RS11885 0.42 -0.2
2,120,866 + SGL_RS11885 0.74 -0.1
2,120,881 - SGL_RS11885 0.75 -0.2
2,120,943 + SGL_RS11885 0.81 +0.0

Or see this region's nucleotide sequence