Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS10775

Experiment: no (N) 1 week

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS10765 and SGL_RS10770 are separated by 114 nucleotidesSGL_RS10770 and SGL_RS10775 are separated by 208 nucleotidesSGL_RS10775 and SGL_RS10780 are separated by 6 nucleotides SGL_RS10765: SGL_RS10765 - serine hydrolase domain-containing protein, at 1,883,329 to 1,884,624 _RS10765 SGL_RS10770: SGL_RS10770 - hypothetical protein, at 1,884,739 to 1,884,927 _RS10770 SGL_RS10775: SGL_RS10775 - DUF3326 domain-containing protein, at 1,885,136 to 1,886,146 _RS10775 SGL_RS10780: SGL_RS10780 - type II CAAX endopeptidase family protein, at 1,886,153 to 1,886,737 _RS10780 Position (kb) 1885 1886 1887Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1884.183 kb on - strand, within SGL_RS10765at 1884.193 kb on + strand, within SGL_RS10765at 1884.198 kb on + strand, within SGL_RS10765at 1884.426 kb on + strand, within SGL_RS10765at 1884.528 kb on - strandat 1884.528 kb on - strandat 1884.533 kb on - strandat 1884.564 kb on - strandat 1884.705 kb on + strandat 1884.723 kb on + strandat 1884.880 kb on + strand, within SGL_RS10770at 1884.913 kb on + strandat 1885.145 kb on + strandat 1885.191 kb on + strandat 1885.206 kb on - strandat 1885.229 kb on + strandat 1885.413 kb on + strand, within SGL_RS10775at 1885.431 kb on + strand, within SGL_RS10775at 1885.618 kb on - strand, within SGL_RS10775at 1885.628 kb on - strand, within SGL_RS10775at 1885.646 kb on + strand, within SGL_RS10775at 1885.929 kb on - strand, within SGL_RS10775at 1885.977 kb on - strand, within SGL_RS10775at 1886.071 kb on + strandat 1886.254 kb on + strand, within SGL_RS10780at 1886.254 kb on + strand, within SGL_RS10780at 1886.353 kb on - strand, within SGL_RS10780at 1886.379 kb on - strand, within SGL_RS10780at 1886.406 kb on + strand, within SGL_RS10780at 1886.451 kb on + strand, within SGL_RS10780at 1886.456 kb on + strand, within SGL_RS10780at 1886.580 kb on - strand, within SGL_RS10780at 1886.620 kb on - strand, within SGL_RS10780at 1886.819 kb on - strandat 1886.871 kb on - strandat 1886.941 kb on - strandat 1886.971 kb on - strandat 1887.018 kb on + strandat 1887.026 kb on - strandat 1887.066 kb on + strandat 1887.087 kb on + strandat 1887.135 kb on + strandat 1887.144 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no (N) 1 week
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1,884,183 - SGL_RS10765 0.66 +0.1
1,884,193 + SGL_RS10765 0.67 +0.2
1,884,198 + SGL_RS10765 0.67 +0.3
1,884,426 + SGL_RS10765 0.85 -0.1
1,884,528 - -0.1
1,884,528 - +0.1
1,884,533 - -0.1
1,884,564 - +1.0
1,884,705 + -2.8
1,884,723 + -1.3
1,884,880 + SGL_RS10770 0.75 -5.0
1,884,913 + +0.1
1,885,145 + -5.3
1,885,191 + -4.0
1,885,206 - -5.9
1,885,229 + -5.4
1,885,413 + SGL_RS10775 0.27 -5.7
1,885,431 + SGL_RS10775 0.29 -5.2
1,885,618 - SGL_RS10775 0.48 -4.6
1,885,628 - SGL_RS10775 0.49 -5.3
1,885,646 + SGL_RS10775 0.50 -4.3
1,885,929 - SGL_RS10775 0.78 -4.8
1,885,977 - SGL_RS10775 0.83 -5.5
1,886,071 + -3.9
1,886,254 + SGL_RS10780 0.17 -0.3
1,886,254 + SGL_RS10780 0.17 +0.1
1,886,353 - SGL_RS10780 0.34 -0.1
1,886,379 - SGL_RS10780 0.39 -0.9
1,886,406 + SGL_RS10780 0.43 -1.0
1,886,451 + SGL_RS10780 0.51 -0.1
1,886,456 + SGL_RS10780 0.52 -0.1
1,886,580 - SGL_RS10780 0.73 +0.0
1,886,620 - SGL_RS10780 0.80 -0.4
1,886,819 - -0.2
1,886,871 - -0.4
1,886,941 - -3.3
1,886,971 - -1.6
1,887,018 + +0.2
1,887,026 - -0.9
1,887,066 + +0.2
1,887,087 + +0.2
1,887,135 + -0.0
1,887,144 + -0.5

Or see this region's nucleotide sequence