Experiment: no (N) 1 week
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS10765 and SGL_RS10770 are separated by 114 nucleotides SGL_RS10770 and SGL_RS10775 are separated by 208 nucleotides SGL_RS10775 and SGL_RS10780 are separated by 6 nucleotides
SGL_RS10765: SGL_RS10765 - serine hydrolase domain-containing protein, at 1,883,329 to 1,884,624
_RS10765
SGL_RS10770: SGL_RS10770 - hypothetical protein, at 1,884,739 to 1,884,927
_RS10770
SGL_RS10775: SGL_RS10775 - DUF3326 domain-containing protein, at 1,885,136 to 1,886,146
_RS10775
SGL_RS10780: SGL_RS10780 - type II CAAX endopeptidase family protein, at 1,886,153 to 1,886,737
_RS10780
Position (kb)
1885
1886
1887 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 1884.183 kb on - strand, within SGL_RS10765 at 1884.193 kb on + strand, within SGL_RS10765 at 1884.198 kb on + strand, within SGL_RS10765 at 1884.426 kb on + strand, within SGL_RS10765 at 1884.528 kb on - strand at 1884.528 kb on - strand at 1884.533 kb on - strand at 1884.564 kb on - strand at 1884.705 kb on + strand at 1884.723 kb on + strand at 1884.880 kb on + strand, within SGL_RS10770 at 1884.913 kb on + strand at 1885.145 kb on + strand at 1885.191 kb on + strand at 1885.206 kb on - strand at 1885.229 kb on + strand at 1885.413 kb on + strand, within SGL_RS10775 at 1885.431 kb on + strand, within SGL_RS10775 at 1885.618 kb on - strand, within SGL_RS10775 at 1885.628 kb on - strand, within SGL_RS10775 at 1885.646 kb on + strand, within SGL_RS10775 at 1885.929 kb on - strand, within SGL_RS10775 at 1885.977 kb on - strand, within SGL_RS10775 at 1886.071 kb on + strand at 1886.254 kb on + strand, within SGL_RS10780 at 1886.254 kb on + strand, within SGL_RS10780 at 1886.353 kb on - strand, within SGL_RS10780 at 1886.379 kb on - strand, within SGL_RS10780 at 1886.406 kb on + strand, within SGL_RS10780 at 1886.451 kb on + strand, within SGL_RS10780 at 1886.456 kb on + strand, within SGL_RS10780 at 1886.580 kb on - strand, within SGL_RS10780 at 1886.620 kb on - strand, within SGL_RS10780 at 1886.819 kb on - strand at 1886.871 kb on - strand at 1886.941 kb on - strand at 1886.971 kb on - strand at 1887.018 kb on + strand at 1887.026 kb on - strand at 1887.066 kb on + strand at 1887.087 kb on + strand at 1887.135 kb on + strand at 1887.144 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction no (N) 1 week remove 1,884,183 - SGL_RS10765 0.66 +0.1 1,884,193 + SGL_RS10765 0.67 +0.2 1,884,198 + SGL_RS10765 0.67 +0.3 1,884,426 + SGL_RS10765 0.85 -0.1 1,884,528 - -0.1 1,884,528 - +0.1 1,884,533 - -0.1 1,884,564 - +1.0 1,884,705 + -2.8 1,884,723 + -1.3 1,884,880 + SGL_RS10770 0.75 -5.0 1,884,913 + +0.1 1,885,145 + -5.3 1,885,191 + -4.0 1,885,206 - -5.9 1,885,229 + -5.4 1,885,413 + SGL_RS10775 0.27 -5.7 1,885,431 + SGL_RS10775 0.29 -5.2 1,885,618 - SGL_RS10775 0.48 -4.6 1,885,628 - SGL_RS10775 0.49 -5.3 1,885,646 + SGL_RS10775 0.50 -4.3 1,885,929 - SGL_RS10775 0.78 -4.8 1,885,977 - SGL_RS10775 0.83 -5.5 1,886,071 + -3.9 1,886,254 + SGL_RS10780 0.17 -0.3 1,886,254 + SGL_RS10780 0.17 +0.1 1,886,353 - SGL_RS10780 0.34 -0.1 1,886,379 - SGL_RS10780 0.39 -0.9 1,886,406 + SGL_RS10780 0.43 -1.0 1,886,451 + SGL_RS10780 0.51 -0.1 1,886,456 + SGL_RS10780 0.52 -0.1 1,886,580 - SGL_RS10780 0.73 +0.0 1,886,620 - SGL_RS10780 0.80 -0.4 1,886,819 - -0.2 1,886,871 - -0.4 1,886,941 - -3.3 1,886,971 - -1.6 1,887,018 + +0.2 1,887,026 - -0.9 1,887,066 + +0.2 1,887,087 + +0.2 1,887,135 + -0.0 1,887,144 + -0.5
Or see this region's nucleotide sequence