Experiment: no (N) 1 week
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS08985 and SGL_RS08990 are separated by 90 nucleotides SGL_RS08990 and SGL_RS08995 are separated by 216 nucleotides SGL_RS08995 and SGL_RS09000 are separated by 86 nucleotides SGL_RS09000 and SGL_RS09005 are separated by 583 nucleotides
SGL_RS08985: SGL_RS08985 - hypothetical protein, at 1,522,300 to 1,522,899
_RS08985
SGL_RS08990: SGL_RS08990 - DUF2605 domain-containing protein, at 1,522,990 to 1,523,310
_RS08990
SGL_RS08995: SGL_RS08995 - NblA/ycf18 family protein, at 1,523,527 to 1,523,709
_RS08995
SGL_RS09000: SGL_RS09000 - NblA/ycf18 family protein, at 1,523,796 to 1,523,984
_RS09000
SGL_RS09005: SGL_RS09005 - hypothetical protein, at 1,524,568 to 1,525,086
_RS09005
Position (kb) 1523
1524 Strain fitness (log2 ratio) -2
-1
0
1 at 1522.903 kb on + strand at 1523.041 kb on - strand, within SGL_RS08990 at 1523.074 kb on - strand, within SGL_RS08990 at 1523.147 kb on + strand, within SGL_RS08990 at 1523.155 kb on - strand, within SGL_RS08990 at 1523.272 kb on - strand, within SGL_RS08990 at 1523.349 kb on + strand at 1523.378 kb on + strand at 1523.492 kb on - strand at 1523.515 kb on + strand at 1523.522 kb on - strand at 1523.634 kb on - strand, within SGL_RS08995 at 1523.685 kb on + strand, within SGL_RS08995 at 1523.685 kb on + strand, within SGL_RS08995 at 1523.693 kb on - strand at 1523.806 kb on + strand at 1523.897 kb on + strand, within SGL_RS09000 at 1524.101 kb on + strand at 1524.302 kb on + strand at 1524.663 kb on + strand, within SGL_RS09005 at 1524.786 kb on - strand, within SGL_RS09005 at 1524.804 kb on + strand, within SGL_RS09005 at 1524.804 kb on + strand, within SGL_RS09005 at 1524.889 kb on + strand, within SGL_RS09005 at 1524.952 kb on + strand, within SGL_RS09005 at 1524.960 kb on - strand, within SGL_RS09005
Per-strain Table
Position Strand Gene LocusTag Fraction no (N) 1 week remove 1,522,903 + -0.0 1,523,041 - SGL_RS08990 0.16 +0.2 1,523,074 - SGL_RS08990 0.26 +0.2 1,523,147 + SGL_RS08990 0.49 +1.0 1,523,155 - SGL_RS08990 0.51 -0.1 1,523,272 - SGL_RS08990 0.88 +0.3 1,523,349 + -0.5 1,523,378 + +0.5 1,523,492 - -0.3 1,523,515 + -0.1 1,523,522 - -0.2 1,523,634 - SGL_RS08995 0.58 -2.6 1,523,685 + SGL_RS08995 0.86 -2.0 1,523,685 + SGL_RS08995 0.86 -2.2 1,523,693 - -1.2 1,523,806 + -2.5 1,523,897 + SGL_RS09000 0.53 -2.7 1,524,101 + -0.6 1,524,302 + +0.0 1,524,663 + SGL_RS09005 0.18 -0.1 1,524,786 - SGL_RS09005 0.42 +0.1 1,524,804 + SGL_RS09005 0.45 -0.0 1,524,804 + SGL_RS09005 0.45 +0.3 1,524,889 + SGL_RS09005 0.62 +0.2 1,524,952 + SGL_RS09005 0.74 +0.1 1,524,960 - SGL_RS09005 0.76 -0.3
Or see this region's nucleotide sequence