Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS04325

Experiment: L-Glutamic Acid Monosodium Salt Monohydrate (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS04315 and SGL_RS04320 are separated by 22 nucleotidesSGL_RS04320 and SGL_RS04325 are separated by 288 nucleotidesSGL_RS04325 and SGL_RS04330 are separated by 139 nucleotides SGL_RS04315: SGL_RS04315 - ABC transporter ATP-binding protein, at 523,016 to 523,798 _RS04315 SGL_RS04320: SGL_RS04320 - hypothetical protein, at 523,821 to 524,093 _RS04320 SGL_RS04325: SGL_RS04325 - CHAT domain-containing protein, at 524,382 to 529,595 _RS04325 SGL_RS04330: SGL_RS04330 - NAD(P)H-dependent glycerol-3-phosphate dehydrogenase, at 529,735 to 530,688 _RS04330 Position (kb) 524 525 526 527 528 529 530Strain fitness (log2 ratio) -2 -1 0 1at 523.397 kb on - strand, within SGL_RS04315at 523.579 kb on + strand, within SGL_RS04315at 523.615 kb on + strand, within SGL_RS04315at 523.723 kb on + strandat 523.723 kb on + strandat 523.731 kb on - strandat 523.757 kb on + strandat 523.762 kb on + strandat 523.783 kb on - strandat 523.918 kb on - strand, within SGL_RS04320at 523.941 kb on + strand, within SGL_RS04320at 524.022 kb on + strand, within SGL_RS04320at 524.317 kb on - strandat 524.459 kb on - strandat 524.480 kb on + strandat 524.599 kb on - strandat 524.715 kb on - strandat 524.850 kb on + strandat 524.937 kb on + strand, within SGL_RS04325at 525.197 kb on - strand, within SGL_RS04325at 525.200 kb on + strand, within SGL_RS04325at 525.213 kb on - strand, within SGL_RS04325at 525.215 kb on - strand, within SGL_RS04325at 525.279 kb on - strand, within SGL_RS04325at 525.425 kb on + strand, within SGL_RS04325at 525.571 kb on - strand, within SGL_RS04325at 525.571 kb on - strand, within SGL_RS04325at 525.571 kb on - strand, within SGL_RS04325at 525.683 kb on - strand, within SGL_RS04325at 525.741 kb on - strand, within SGL_RS04325at 525.767 kb on - strand, within SGL_RS04325at 525.949 kb on - strand, within SGL_RS04325at 525.949 kb on - strand, within SGL_RS04325at 526.138 kb on - strand, within SGL_RS04325at 526.177 kb on - strand, within SGL_RS04325at 526.303 kb on + strand, within SGL_RS04325at 526.511 kb on - strand, within SGL_RS04325at 526.560 kb on - strand, within SGL_RS04325at 526.584 kb on - strand, within SGL_RS04325at 526.589 kb on - strand, within SGL_RS04325at 526.672 kb on - strand, within SGL_RS04325at 526.979 kb on - strand, within SGL_RS04325at 526.987 kb on + strand, within SGL_RS04325at 527.010 kb on + strand, within SGL_RS04325at 527.073 kb on + strand, within SGL_RS04325at 527.081 kb on + strand, within SGL_RS04325at 527.218 kb on + strand, within SGL_RS04325at 527.324 kb on + strand, within SGL_RS04325at 527.584 kb on + strand, within SGL_RS04325at 528.059 kb on - strand, within SGL_RS04325at 528.375 kb on + strand, within SGL_RS04325at 528.394 kb on - strand, within SGL_RS04325at 528.622 kb on + strand, within SGL_RS04325at 528.632 kb on - strand, within SGL_RS04325at 528.829 kb on + strand, within SGL_RS04325at 528.923 kb on + strand, within SGL_RS04325at 529.067 kb on - strand, within SGL_RS04325at 529.072 kb on - strand, within SGL_RS04325at 529.194 kb on + strandat 529.263 kb on + strandat 529.340 kb on + strandat 529.391 kb on + strandat 529.397 kb on + strandat 529.399 kb on - strandat 529.400 kb on - strandat 529.405 kb on - strandat 529.406 kb on - strandat 529.423 kb on - strandat 529.425 kb on + strandat 529.428 kb on - strandat 529.438 kb on - strandat 529.521 kb on - strandat 529.567 kb on + strandat 529.575 kb on + strandat 529.581 kb on - strandat 529.583 kb on - strandat 529.761 kb on + strandat 530.141 kb on - strand, within SGL_RS04330at 530.518 kb on - strand, within SGL_RS04330

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic Acid Monosodium Salt Monohydrate (N)
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523,397 - SGL_RS04315 0.49 +0.8
523,579 + SGL_RS04315 0.72 -0.8
523,615 + SGL_RS04315 0.77 -0.4
523,723 + -0.7
523,723 + -0.4
523,731 - -0.6
523,757 + -0.6
523,762 + -0.7
523,783 - +0.2
523,918 - SGL_RS04320 0.36 -0.2
523,941 + SGL_RS04320 0.44 -0.8
524,022 + SGL_RS04320 0.74 +0.2
524,317 - -0.0
524,459 - +0.3
524,480 + +0.8
524,599 - +0.6
524,715 - +0.4
524,850 + +0.4
524,937 + SGL_RS04325 0.11 +0.4
525,197 - SGL_RS04325 0.16 +0.5
525,200 + SGL_RS04325 0.16 +0.3
525,213 - SGL_RS04325 0.16 +0.1
525,215 - SGL_RS04325 0.16 -0.3
525,279 - SGL_RS04325 0.17 +0.7
525,425 + SGL_RS04325 0.20 -0.3
525,571 - SGL_RS04325 0.23 +0.4
525,571 - SGL_RS04325 0.23 +0.8
525,571 - SGL_RS04325 0.23 +0.6
525,683 - SGL_RS04325 0.25 +0.2
525,741 - SGL_RS04325 0.26 +0.7
525,767 - SGL_RS04325 0.27 +0.2
525,949 - SGL_RS04325 0.30 +0.1
525,949 - SGL_RS04325 0.30 +0.7
526,138 - SGL_RS04325 0.34 +0.1
526,177 - SGL_RS04325 0.34 -1.6
526,303 + SGL_RS04325 0.37 +0.1
526,511 - SGL_RS04325 0.41 +0.4
526,560 - SGL_RS04325 0.42 +0.2
526,584 - SGL_RS04325 0.42 +0.7
526,589 - SGL_RS04325 0.42 +0.7
526,672 - SGL_RS04325 0.44 +0.4
526,979 - SGL_RS04325 0.50 +0.8
526,987 + SGL_RS04325 0.50 -0.1
527,010 + SGL_RS04325 0.50 +1.0
527,073 + SGL_RS04325 0.52 +0.5
527,081 + SGL_RS04325 0.52 +0.3
527,218 + SGL_RS04325 0.54 -0.9
527,324 + SGL_RS04325 0.56 +0.1
527,584 + SGL_RS04325 0.61 +0.1
528,059 - SGL_RS04325 0.71 +0.4
528,375 + SGL_RS04325 0.77 +0.2
528,394 - SGL_RS04325 0.77 -1.0
528,622 + SGL_RS04325 0.81 +0.1
528,632 - SGL_RS04325 0.82 +0.4
528,829 + SGL_RS04325 0.85 +1.0
528,923 + SGL_RS04325 0.87 +1.3
529,067 - SGL_RS04325 0.90 +0.2
529,072 - SGL_RS04325 0.90 -0.3
529,194 + +0.3
529,263 + +0.3
529,340 + -0.4
529,391 + +0.3
529,397 + -0.2
529,399 - +0.4
529,400 - +0.4
529,405 - -0.1
529,406 - +0.1
529,423 - -0.8
529,425 + +0.4
529,428 - +0.4
529,438 - -0.1
529,521 - +0.2
529,567 + +0.3
529,575 + +0.7
529,581 - +0.8
529,583 - -0.2
529,761 + -2.0
530,141 - SGL_RS04330 0.43 -1.7
530,518 - SGL_RS04330 0.82 -2.6

Or see this region's nucleotide sequence