Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14065

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14055 and SGL_RS14060 overlap by 4 nucleotidesSGL_RS14060 and SGL_RS14065 are separated by 10 nucleotidesSGL_RS14065 and SGL_RS14070 are separated by 24 nucleotidesSGL_RS14070 and SGL_RS14075 are separated by 102 nucleotides SGL_RS14055: SGL_RS14055 - phosphoribosylglycinamide formyltransferase, at 2,613,717 to 2,614,370 _RS14055 SGL_RS14060: SGL_RS14060 - PD-(D/E)XK nuclease family protein, at 2,614,367 to 2,615,089 _RS14060 SGL_RS14065: SGL_RS14065 - AAA family ATPase, at 2,615,100 to 2,616,599 _RS14065 SGL_RS14070: SGL_RS14070 - class I SAM-dependent methyltransferase, at 2,616,624 to 2,617,382 _RS14070 SGL_RS14075: SGL_RS14075 - CAAD domain-containing protein, at 2,617,485 to 2,617,889 _RS14075 Position (kb) 2615 2616 2617Strain fitness (log2 ratio) -1 0 1at 2614.124 kb on + strand, within SGL_RS14055at 2614.169 kb on + strand, within SGL_RS14055at 2614.169 kb on - strand, within SGL_RS14055at 2614.177 kb on - strand, within SGL_RS14055at 2614.206 kb on + strand, within SGL_RS14055at 2614.206 kb on + strand, within SGL_RS14055at 2614.216 kb on - strand, within SGL_RS14055at 2614.250 kb on - strand, within SGL_RS14055at 2614.371 kb on - strandat 2614.371 kb on - strandat 2614.378 kb on - strandat 2614.416 kb on + strandat 2614.449 kb on - strand, within SGL_RS14060at 2614.536 kb on - strand, within SGL_RS14060at 2614.572 kb on + strand, within SGL_RS14060at 2614.605 kb on - strand, within SGL_RS14060at 2614.678 kb on + strand, within SGL_RS14060at 2614.678 kb on - strand, within SGL_RS14060at 2614.821 kb on - strand, within SGL_RS14060at 2615.017 kb on + strandat 2615.032 kb on - strandat 2615.146 kb on - strandat 2615.161 kb on - strandat 2615.205 kb on + strandat 2615.213 kb on - strandat 2615.229 kb on + strandat 2615.261 kb on - strand, within SGL_RS14065at 2615.434 kb on - strand, within SGL_RS14065at 2615.522 kb on + strand, within SGL_RS14065at 2615.522 kb on + strand, within SGL_RS14065at 2615.528 kb on - strand, within SGL_RS14065at 2615.625 kb on + strand, within SGL_RS14065at 2615.625 kb on + strand, within SGL_RS14065at 2615.627 kb on - strand, within SGL_RS14065at 2615.855 kb on + strand, within SGL_RS14065at 2615.881 kb on + strand, within SGL_RS14065at 2615.904 kb on - strand, within SGL_RS14065at 2615.965 kb on + strand, within SGL_RS14065at 2616.053 kb on - strand, within SGL_RS14065at 2616.087 kb on + strand, within SGL_RS14065at 2616.089 kb on - strand, within SGL_RS14065at 2616.155 kb on - strand, within SGL_RS14065at 2616.282 kb on + strand, within SGL_RS14065at 2616.311 kb on + strand, within SGL_RS14065at 2616.342 kb on + strand, within SGL_RS14065at 2616.357 kb on - strand, within SGL_RS14065at 2616.430 kb on + strand, within SGL_RS14065at 2616.432 kb on - strand, within SGL_RS14065at 2616.499 kb on - strandat 2616.500 kb on - strandat 2616.643 kb on - strandat 2616.796 kb on + strand, within SGL_RS14070at 2616.960 kb on + strand, within SGL_RS14070at 2617.125 kb on - strand, within SGL_RS14070at 2617.184 kb on - strand, within SGL_RS14070at 2617.213 kb on + strand, within SGL_RS14070at 2617.307 kb on + strandat 2617.340 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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2,614,124 + SGL_RS14055 0.62 -0.6
2,614,169 + SGL_RS14055 0.69 +0.4
2,614,169 - SGL_RS14055 0.69 -0.5
2,614,177 - SGL_RS14055 0.70 -0.5
2,614,206 + SGL_RS14055 0.75 -0.1
2,614,206 + SGL_RS14055 0.75 -0.1
2,614,216 - SGL_RS14055 0.76 -0.3
2,614,250 - SGL_RS14055 0.81 -0.6
2,614,371 - -0.5
2,614,371 - -0.1
2,614,378 - -0.5
2,614,416 + -1.3
2,614,449 - SGL_RS14060 0.11 -1.7
2,614,536 - SGL_RS14060 0.23 -0.7
2,614,572 + SGL_RS14060 0.28 -1.2
2,614,605 - SGL_RS14060 0.33 -1.5
2,614,678 + SGL_RS14060 0.43 -0.7
2,614,678 - SGL_RS14060 0.43 -1.5
2,614,821 - SGL_RS14060 0.63 -1.1
2,615,017 + -0.1
2,615,032 - -0.4
2,615,146 - -0.1
2,615,161 - -0.2
2,615,205 + -0.5
2,615,213 - -1.2
2,615,229 + -0.8
2,615,261 - SGL_RS14065 0.11 -0.4
2,615,434 - SGL_RS14065 0.22 -0.2
2,615,522 + SGL_RS14065 0.28 -0.3
2,615,522 + SGL_RS14065 0.28 +0.2
2,615,528 - SGL_RS14065 0.29 -0.7
2,615,625 + SGL_RS14065 0.35 -1.0
2,615,625 + SGL_RS14065 0.35 +0.1
2,615,627 - SGL_RS14065 0.35 -0.4
2,615,855 + SGL_RS14065 0.50 -0.8
2,615,881 + SGL_RS14065 0.52 +0.4
2,615,904 - SGL_RS14065 0.54 -0.5
2,615,965 + SGL_RS14065 0.58 -0.4
2,616,053 - SGL_RS14065 0.64 -0.2
2,616,087 + SGL_RS14065 0.66 -0.2
2,616,089 - SGL_RS14065 0.66 -0.4
2,616,155 - SGL_RS14065 0.70 +0.4
2,616,282 + SGL_RS14065 0.79 -1.3
2,616,311 + SGL_RS14065 0.81 -0.8
2,616,342 + SGL_RS14065 0.83 -0.3
2,616,357 - SGL_RS14065 0.84 -0.4
2,616,430 + SGL_RS14065 0.89 -0.4
2,616,432 - SGL_RS14065 0.89 -1.1
2,616,499 - -1.5
2,616,500 - -0.5
2,616,643 - +0.5
2,616,796 + SGL_RS14070 0.23 +0.3
2,616,960 + SGL_RS14070 0.44 +0.3
2,617,125 - SGL_RS14070 0.66 +0.3
2,617,184 - SGL_RS14070 0.74 +0.5
2,617,213 + SGL_RS14070 0.78 +0.2
2,617,307 + -0.3
2,617,340 - +0.3

Or see this region's nucleotide sequence