Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS12590

Experiment: L-Proline (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS12585 and SGL_RS12590 are separated by 49 nucleotidesSGL_RS12590 and SGL_RS12595 are separated by 88 nucleotides SGL_RS12585: SGL_RS12585 - ABC transporter permease subunit, at 2,281,509 to 2,283,182 _RS12585 SGL_RS12590: SGL_RS12590 - low molecular weight protein-tyrosine-phosphatase, at 2,283,232 to 2,283,705 _RS12590 SGL_RS12595: SGL_RS12595 - ROK family protein, at 2,283,794 to 2,284,777 _RS12595 Position (kb) 2283 2284Strain fitness (log2 ratio) -2 -1 0 1at 2282.364 kb on + strand, within SGL_RS12585at 2282.397 kb on - strand, within SGL_RS12585at 2282.487 kb on + strand, within SGL_RS12585at 2282.601 kb on + strand, within SGL_RS12585at 2282.781 kb on - strand, within SGL_RS12585at 2282.932 kb on - strand, within SGL_RS12585at 2282.942 kb on - strand, within SGL_RS12585at 2283.606 kb on + strand, within SGL_RS12590at 2283.621 kb on + strand, within SGL_RS12590at 2283.629 kb on - strand, within SGL_RS12590at 2283.808 kb on + strandat 2283.870 kb on + strandat 2283.994 kb on - strand, within SGL_RS12595at 2284.018 kb on - strand, within SGL_RS12595at 2284.089 kb on + strand, within SGL_RS12595at 2284.281 kb on - strand, within SGL_RS12595at 2284.324 kb on + strand, within SGL_RS12595at 2284.422 kb on - strand, within SGL_RS12595at 2284.570 kb on - strand, within SGL_RS12595

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
remove
2,282,364 + SGL_RS12585 0.51 -1.7
2,282,397 - SGL_RS12585 0.53 -0.4
2,282,487 + SGL_RS12585 0.58 +1.6
2,282,601 + SGL_RS12585 0.65 -0.9
2,282,781 - SGL_RS12585 0.76 -2.4
2,282,932 - SGL_RS12585 0.85 -1.5
2,282,942 - SGL_RS12585 0.86 -0.9
2,283,606 + SGL_RS12590 0.79 +0.1
2,283,621 + SGL_RS12590 0.82 +1.0
2,283,629 - SGL_RS12590 0.84 +0.5
2,283,808 + -0.2
2,283,870 + +0.2
2,283,994 - SGL_RS12595 0.20 -0.7
2,284,018 - SGL_RS12595 0.23 -0.5
2,284,089 + SGL_RS12595 0.30 -0.0
2,284,281 - SGL_RS12595 0.49 -0.1
2,284,324 + SGL_RS12595 0.54 -0.6
2,284,422 - SGL_RS12595 0.64 -0.3
2,284,570 - SGL_RS12595 0.79 +0.6

Or see this region's nucleotide sequence