Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS17815

Experiment: Guanidine Hydrochloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS17810 and SGL_RS17815 are separated by 193 nucleotidesSGL_RS17815 and SGL_RS17820 are separated by 504 nucleotides SGL_RS17810: SGL_RS17810 - iron uptake porin, at 3,454,422 to 3,456,044 _RS17810 SGL_RS17815: SGL_RS17815 - histidine phosphatase family protein, at 3,456,238 to 3,456,954 _RS17815 SGL_RS17820: SGL_RS17820 - photosystem I reaction center protein subunit XI, at 3,457,459 to 3,457,932 _RS17820 Position (kb) 3456 3457Strain fitness (log2 ratio) -8 -7 -6 -5 -4 -3 -2 -1 0 1at 3455.296 kb on + strand, within SGL_RS17810at 3455.328 kb on + strand, within SGL_RS17810at 3455.338 kb on + strand, within SGL_RS17810at 3455.420 kb on + strand, within SGL_RS17810at 3455.507 kb on + strand, within SGL_RS17810at 3455.532 kb on - strand, within SGL_RS17810at 3455.581 kb on + strand, within SGL_RS17810at 3455.648 kb on - strand, within SGL_RS17810at 3455.826 kb on + strand, within SGL_RS17810at 3455.839 kb on + strand, within SGL_RS17810at 3455.866 kb on + strand, within SGL_RS17810at 3455.869 kb on - strand, within SGL_RS17810at 3455.902 kb on + strandat 3455.910 kb on - strandat 3456.010 kb on + strandat 3456.016 kb on + strandat 3456.041 kb on + strandat 3456.041 kb on + strandat 3456.066 kb on - strandat 3456.316 kb on - strand, within SGL_RS17815at 3456.336 kb on - strand, within SGL_RS17815at 3456.473 kb on - strand, within SGL_RS17815at 3456.614 kb on + strand, within SGL_RS17815at 3456.614 kb on + strand, within SGL_RS17815at 3456.614 kb on + strand, within SGL_RS17815at 3456.622 kb on - strand, within SGL_RS17815at 3456.692 kb on + strand, within SGL_RS17815at 3456.700 kb on - strand, within SGL_RS17815at 3456.715 kb on - strand, within SGL_RS17815at 3456.720 kb on - strand, within SGL_RS17815at 3456.843 kb on + strand, within SGL_RS17815at 3456.843 kb on + strand, within SGL_RS17815at 3456.843 kb on + strand, within SGL_RS17815at 3456.843 kb on + strand, within SGL_RS17815at 3456.851 kb on - strand, within SGL_RS17815at 3456.851 kb on - strand, within SGL_RS17815at 3456.996 kb on + strandat 3457.119 kb on + strandat 3457.119 kb on + strandat 3457.215 kb on + strandat 3457.233 kb on - strandat 3457.301 kb on - strandat 3457.315 kb on + strandat 3457.315 kb on + strandat 3457.469 kb on - strandat 3457.494 kb on + strandat 3457.599 kb on + strand, within SGL_RS17820at 3457.711 kb on + strand, within SGL_RS17820

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanidine Hydrochloride (N)
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3,455,296 + SGL_RS17810 0.54 -5.5
3,455,328 + SGL_RS17810 0.56 -2.2
3,455,338 + SGL_RS17810 0.56 -5.8
3,455,420 + SGL_RS17810 0.61 -7.1
3,455,507 + SGL_RS17810 0.67 -7.4
3,455,532 - SGL_RS17810 0.68 -6.9
3,455,581 + SGL_RS17810 0.71 -5.4
3,455,648 - SGL_RS17810 0.76 -8.2
3,455,826 + SGL_RS17810 0.87 -3.8
3,455,839 + SGL_RS17810 0.87 -4.9
3,455,866 + SGL_RS17810 0.89 -8.0
3,455,869 - SGL_RS17810 0.89 -6.8
3,455,902 + -5.3
3,455,910 - -6.5
3,456,010 + -5.1
3,456,016 + -5.1
3,456,041 + -3.3
3,456,041 + -5.4
3,456,066 - -4.9
3,456,316 - SGL_RS17815 0.11 -0.9
3,456,336 - SGL_RS17815 0.14 -0.8
3,456,473 - SGL_RS17815 0.33 -0.6
3,456,614 + SGL_RS17815 0.52 -0.4
3,456,614 + SGL_RS17815 0.52 -0.5
3,456,614 + SGL_RS17815 0.52 -0.6
3,456,622 - SGL_RS17815 0.54 -0.5
3,456,692 + SGL_RS17815 0.63 -0.9
3,456,700 - SGL_RS17815 0.64 -1.2
3,456,715 - SGL_RS17815 0.67 -0.8
3,456,720 - SGL_RS17815 0.67 -0.8
3,456,843 + SGL_RS17815 0.84 -1.3
3,456,843 + SGL_RS17815 0.84 -0.8
3,456,843 + SGL_RS17815 0.84 -0.2
3,456,843 + SGL_RS17815 0.84 -1.0
3,456,851 - SGL_RS17815 0.85 -0.6
3,456,851 - SGL_RS17815 0.85 -0.9
3,456,996 + -0.9
3,457,119 + +0.2
3,457,119 + +0.4
3,457,215 + +0.4
3,457,233 - -0.7
3,457,301 - +0.4
3,457,315 + +0.3
3,457,315 + -0.1
3,457,469 - -3.4
3,457,494 + -1.2
3,457,599 + SGL_RS17820 0.30 -1.2
3,457,711 + SGL_RS17820 0.53 -2.4

Or see this region's nucleotide sequence