Experiment: Guanidine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS16460 and SGL_RS16465 are separated by 135 nucleotides SGL_RS16465 and SGL_RS16470 are separated by 124 nucleotides SGL_RS16470 and SGL_RS16475 are separated by 31 nucleotides
SGL_RS16460: SGL_RS16460 - HAD-IIB family hydrolase, at 3,140,713 to 3,142,875
_RS16460
SGL_RS16465: SGL_RS16465 - hypothetical protein, at 3,143,011 to 3,143,571
_RS16465
SGL_RS16470: SGL_RS16470 - CheW domain-containing protein, at 3,143,696 to 3,144,181
_RS16470
SGL_RS16475: SGL_RS16475 - Hpt domain-containing protein, at 3,144,213 to 3,148,421
_RS16475
Position (kb)
3143
3144
3145 Strain fitness (log2 ratio)
-1
0
1 at 3142.747 kb on + strand at 3142.747 kb on + strand at 3142.755 kb on - strand at 3142.756 kb on - strand at 3142.761 kb on - strand at 3142.918 kb on + strand at 3142.918 kb on + strand at 3142.918 kb on + strand at 3142.926 kb on - strand at 3142.926 kb on - strand at 3142.926 kb on - strand at 3142.926 kb on - strand at 3142.926 kb on - strand at 3142.926 kb on - strand at 3142.928 kb on - strand at 3142.928 kb on - strand at 3142.928 kb on - strand at 3142.928 kb on - strand at 3142.970 kb on + strand at 3142.997 kb on + strand at 3143.005 kb on - strand at 3143.016 kb on - strand at 3143.039 kb on - strand at 3143.066 kb on - strand at 3143.066 kb on - strand at 3143.117 kb on + strand, within SGL_RS16465 at 3143.158 kb on - strand, within SGL_RS16465 at 3143.178 kb on + strand, within SGL_RS16465 at 3143.198 kb on + strand, within SGL_RS16465 at 3143.223 kb on + strand, within SGL_RS16465 at 3143.225 kb on + strand, within SGL_RS16465 at 3143.351 kb on + strand, within SGL_RS16465 at 3143.351 kb on + strand, within SGL_RS16465 at 3143.352 kb on + strand, within SGL_RS16465 at 3143.475 kb on - strand, within SGL_RS16465 at 3143.573 kb on - strand at 3143.577 kb on + strand at 3143.578 kb on - strand at 3143.590 kb on - strand at 3143.600 kb on - strand at 3143.715 kb on - strand at 3143.776 kb on + strand, within SGL_RS16470 at 3143.933 kb on + strand, within SGL_RS16470 at 3143.942 kb on - strand, within SGL_RS16470 at 3143.980 kb on - strand, within SGL_RS16470 at 3144.031 kb on + strand, within SGL_RS16470 at 3144.032 kb on - strand, within SGL_RS16470 at 3144.034 kb on - strand, within SGL_RS16470 at 3144.079 kb on - strand, within SGL_RS16470 at 3144.140 kb on + strand at 3144.148 kb on - strand at 3144.241 kb on - strand at 3144.242 kb on + strand at 3144.249 kb on + strand at 3144.259 kb on + strand at 3144.267 kb on - strand at 3144.280 kb on + strand at 3144.280 kb on + strand at 3144.280 kb on + strand at 3144.280 kb on + strand at 3144.288 kb on - strand at 3144.288 kb on - strand at 3144.288 kb on - strand at 3144.288 kb on - strand at 3144.355 kb on - strand at 3144.357 kb on + strand at 3144.479 kb on - strand at 3144.484 kb on + strand at 3144.486 kb on + strand at 3144.486 kb on + strand at 3144.493 kb on + strand at 3144.494 kb on - strand at 3144.505 kb on + strand at 3144.513 kb on - strand at 3144.513 kb on - strand at 3144.535 kb on - strand at 3144.561 kb on + strand at 3144.561 kb on + strand at 3144.608 kb on + strand at 3144.608 kb on + strand at 3144.608 kb on + strand at 3144.665 kb on + strand, within SGL_RS16475 at 3144.683 kb on - strand, within SGL_RS16475 at 3144.754 kb on + strand, within SGL_RS16475 at 3144.757 kb on - strand, within SGL_RS16475 at 3144.789 kb on - strand, within SGL_RS16475 at 3145.014 kb on + strand, within SGL_RS16475 at 3145.023 kb on - strand, within SGL_RS16475 at 3145.025 kb on + strand, within SGL_RS16475 at 3145.039 kb on + strand, within SGL_RS16475 at 3145.067 kb on + strand, within SGL_RS16475 at 3145.089 kb on - strand, within SGL_RS16475 at 3145.108 kb on + strand, within SGL_RS16475 at 3145.116 kb on - strand, within SGL_RS16475 at 3145.145 kb on - strand, within SGL_RS16475 at 3145.155 kb on + strand, within SGL_RS16475 at 3145.167 kb on + strand, within SGL_RS16475 at 3145.178 kb on + strand, within SGL_RS16475
Per-strain Table
Position Strand Gene LocusTag Fraction Guanidine Hydrochloride (N) remove 3,142,747 + +0.2 3,142,747 + +1.0 3,142,755 - +0.4 3,142,756 - +0.3 3,142,761 - +0.3 3,142,918 + +0.3 3,142,918 + +0.4 3,142,918 + -0.0 3,142,926 - -0.1 3,142,926 - +0.1 3,142,926 - +0.0 3,142,926 - +0.4 3,142,926 - +0.5 3,142,926 - -0.0 3,142,928 - +0.4 3,142,928 - +0.4 3,142,928 - +0.3 3,142,928 - +0.1 3,142,970 + +0.6 3,142,997 + +0.1 3,143,005 - +0.6 3,143,016 - -1.2 3,143,039 - -0.2 3,143,066 - +0.0 3,143,066 - -0.3 3,143,117 + SGL_RS16465 0.19 +0.1 3,143,158 - SGL_RS16465 0.26 +0.2 3,143,178 + SGL_RS16465 0.30 -0.5 3,143,198 + SGL_RS16465 0.33 -0.2 3,143,223 + SGL_RS16465 0.38 -0.2 3,143,225 + SGL_RS16465 0.38 +0.1 3,143,351 + SGL_RS16465 0.61 +0.3 3,143,351 + SGL_RS16465 0.61 +0.7 3,143,352 + SGL_RS16465 0.61 +0.1 3,143,475 - SGL_RS16465 0.83 +0.1 3,143,573 - -0.0 3,143,577 + -0.1 3,143,578 - -0.9 3,143,590 - -0.0 3,143,600 - +0.6 3,143,715 - +0.4 3,143,776 + SGL_RS16470 0.16 +0.4 3,143,933 + SGL_RS16470 0.49 +0.4 3,143,942 - SGL_RS16470 0.51 +0.5 3,143,980 - SGL_RS16470 0.58 +0.2 3,144,031 + SGL_RS16470 0.69 +0.2 3,144,032 - SGL_RS16470 0.69 +0.0 3,144,034 - SGL_RS16470 0.70 +0.2 3,144,079 - SGL_RS16470 0.79 +0.9 3,144,140 + +0.4 3,144,148 - +0.5 3,144,241 - -0.5 3,144,242 + +0.0 3,144,249 + +0.5 3,144,259 + +0.3 3,144,267 - +0.5 3,144,280 + +0.9 3,144,280 + +0.4 3,144,280 + +0.3 3,144,280 + +0.8 3,144,288 - -0.1 3,144,288 - +0.3 3,144,288 - +0.4 3,144,288 - +0.5 3,144,355 - -0.0 3,144,357 + -0.1 3,144,479 - +0.0 3,144,484 + +0.4 3,144,486 + +1.2 3,144,486 + +0.6 3,144,493 + +0.2 3,144,494 - -0.4 3,144,505 + +0.6 3,144,513 - -0.1 3,144,513 - +0.6 3,144,535 - +0.1 3,144,561 + +0.0 3,144,561 + +0.1 3,144,608 + +0.4 3,144,608 + -0.2 3,144,608 + -0.6 3,144,665 + SGL_RS16475 0.11 -0.1 3,144,683 - SGL_RS16475 0.11 +1.5 3,144,754 + SGL_RS16475 0.13 -1.6 3,144,757 - SGL_RS16475 0.13 +0.4 3,144,789 - SGL_RS16475 0.14 +0.8 3,145,014 + SGL_RS16475 0.19 +0.0 3,145,023 - SGL_RS16475 0.19 +0.1 3,145,025 + SGL_RS16475 0.19 -0.4 3,145,039 + SGL_RS16475 0.20 +0.6 3,145,067 + SGL_RS16475 0.20 +0.9 3,145,089 - SGL_RS16475 0.21 +0.2 3,145,108 + SGL_RS16475 0.21 -1.1 3,145,116 - SGL_RS16475 0.21 +0.5 3,145,145 - SGL_RS16475 0.22 +0.0 3,145,155 + SGL_RS16475 0.22 +0.3 3,145,167 + SGL_RS16475 0.23 +0.8 3,145,178 + SGL_RS16475 0.23 +0.3
Or see this region's nucleotide sequence