Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS12975

Experiment: Guanidine Hydrochloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS12970 and SGL_RS12975 are separated by 27 nucleotidesSGL_RS12975 and SGL_RS12985 are separated by 255 nucleotides SGL_RS12970: SGL_RS12970 - 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD, at 2,385,351 to 2,385,911 _RS12970 SGL_RS12975: SGL_RS12975 - glycosyltransferase family 1 protein, at 2,385,939 to 2,387,168 _RS12975 SGL_RS12985: SGL_RS12985 - decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase, at 2,387,424 to 2,388,851 _RS12985 Position (kb) 2385 2386 2387 2388Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 2385.059 kb on + strandat 2385.099 kb on - strandat 2385.393 kb on + strandat 2385.566 kb on - strand, within SGL_RS12970at 2385.607 kb on - strand, within SGL_RS12970at 2385.716 kb on + strand, within SGL_RS12970at 2385.724 kb on - strand, within SGL_RS12970at 2385.729 kb on - strand, within SGL_RS12970at 2385.799 kb on + strand, within SGL_RS12970at 2385.821 kb on - strand, within SGL_RS12970at 2385.839 kb on - strand, within SGL_RS12970at 2385.913 kb on + strandat 2385.975 kb on + strandat 2385.975 kb on + strandat 2385.975 kb on + strandat 2385.977 kb on + strandat 2385.983 kb on - strandat 2385.983 kb on - strandat 2385.992 kb on + strandat 2386.024 kb on + strandat 2387.263 kb on - strandat 2387.272 kb on - strandat 2387.462 kb on + strandat 2387.462 kb on + strandat 2387.474 kb on + strandat 2387.869 kb on + strand, within SGL_RS12985at 2387.903 kb on + strand, within SGL_RS12985at 2387.919 kb on - strand, within SGL_RS12985at 2387.969 kb on + strand, within SGL_RS12985

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanidine Hydrochloride (N)
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2,385,059 + +0.6
2,385,099 - +0.1
2,385,393 + -0.4
2,385,566 - SGL_RS12970 0.38 +1.1
2,385,607 - SGL_RS12970 0.46 +0.5
2,385,716 + SGL_RS12970 0.65 +0.9
2,385,724 - SGL_RS12970 0.66 +3.5
2,385,729 - SGL_RS12970 0.67 +0.6
2,385,799 + SGL_RS12970 0.80 +0.4
2,385,821 - SGL_RS12970 0.84 +0.7
2,385,839 - SGL_RS12970 0.87 +1.0
2,385,913 + +0.3
2,385,975 + +0.5
2,385,975 + +0.2
2,385,975 + +0.6
2,385,977 + +0.4
2,385,983 - +1.7
2,385,983 - +1.5
2,385,992 + -0.4
2,386,024 + +0.6
2,387,263 - +0.0
2,387,272 - -1.0
2,387,462 + -4.8
2,387,462 + -4.7
2,387,474 + -1.8
2,387,869 + SGL_RS12985 0.31 -4.3
2,387,903 + SGL_RS12985 0.34 -2.8
2,387,919 - SGL_RS12985 0.35 -3.0
2,387,969 + SGL_RS12985 0.38 -1.2

Or see this region's nucleotide sequence