Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS18210 and SGL_RS18215 are separated by 75 nucleotides SGL_RS18215 and SGL_RS18220 are separated by 231 nucleotides SGL_RS18220 and SGL_RS18225 are separated by 38 nucleotides
SGL_RS18210: SGL_RS18210 - 5-(carboxyamino)imidazole ribonucleotide synthase, at 3,536,464 to 3,537,630
_RS18210
SGL_RS18215: SGL_RS18215 - pentapeptide repeat-containing protein, at 3,537,706 to 3,538,215
_RS18215
SGL_RS18220: SGL_RS18220 - hypothetical protein, at 3,538,447 to 3,538,803
_RS18220
SGL_RS18225: SGL_RS18225 - cofactor assembly of complex C subunit B, at 3,538,842 to 3,539,387
_RS18225
Position (kb)
3537
3538
3539 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 3536.813 kb on - strand, within SGL_RS18210 at 3537.734 kb on - strand at 3537.918 kb on - strand, within SGL_RS18215 at 3538.064 kb on - strand, within SGL_RS18215 at 3538.152 kb on - strand, within SGL_RS18215 at 3538.182 kb on + strand at 3538.315 kb on - strand at 3538.329 kb on - strand at 3538.421 kb on - strand at 3539.037 kb on - strand, within SGL_RS18225 at 3539.070 kb on + strand, within SGL_RS18225 at 3539.124 kb on - strand, within SGL_RS18225 at 3539.139 kb on - strand, within SGL_RS18225 at 3539.214 kb on + strand, within SGL_RS18225
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 3,536,813 - SGL_RS18210 0.30 -0.4 3,537,734 - -2.9 3,537,918 - SGL_RS18215 0.42 -4.3 3,538,064 - SGL_RS18215 0.70 -3.0 3,538,152 - SGL_RS18215 0.87 -5.8 3,538,182 + -4.6 3,538,315 - -0.0 3,538,329 - +0.2 3,538,421 - +0.3 3,539,037 - SGL_RS18225 0.36 +0.2 3,539,070 + SGL_RS18225 0.42 -0.6 3,539,124 - SGL_RS18225 0.52 -0.3 3,539,139 - SGL_RS18225 0.54 +0.1 3,539,214 + SGL_RS18225 0.68 +0.3
Or see this region's nucleotide sequence