Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS17330

Experiment: nitrate (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS17320 and SGL_RS17325 overlap by 4 nucleotidesSGL_RS17325 and SGL_RS17330 are separated by 297 nucleotidesSGL_RS17330 and SGL_RS17335 are separated by 82 nucleotidesSGL_RS17335 and SGL_RS17340 are separated by 81 nucleotides SGL_RS17320: SGL_RS17320 - hypothetical protein, at 3,341,880 to 3,342,128 _RS17320 SGL_RS17325: SGL_RS17325 - putative toxin-antitoxin system toxin component, PIN family, at 3,342,125 to 3,342,559 _RS17325 SGL_RS17330: SGL_RS17330 - biosynthetic arginine decarboxylase, at 3,342,857 to 3,344,944 _RS17330 SGL_RS17335: SGL_RS17335 - hypothetical protein, at 3,345,027 to 3,345,779 _RS17335 SGL_RS17340: SGL_RS17340 - quinolinate synthase NadA, at 3,345,861 to 3,346,817 _RS17340 Position (kb) 3342 3343 3344 3345Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 3342.219 kb on - strand, within SGL_RS17325at 3342.254 kb on + strand, within SGL_RS17325at 3342.763 kb on + strandat 3342.840 kb on - strandat 3342.918 kb on + strandat 3342.918 kb on + strandat 3342.974 kb on + strandat 3342.988 kb on - strandat 3342.993 kb on + strandat 3343.003 kb on - strandat 3343.095 kb on + strand, within SGL_RS17330at 3343.131 kb on - strand, within SGL_RS17330at 3343.361 kb on - strand, within SGL_RS17330at 3343.400 kb on - strand, within SGL_RS17330at 3343.402 kb on - strand, within SGL_RS17330at 3343.407 kb on - strand, within SGL_RS17330at 3343.412 kb on - strand, within SGL_RS17330at 3343.725 kb on + strand, within SGL_RS17330at 3343.754 kb on + strand, within SGL_RS17330at 3343.809 kb on + strand, within SGL_RS17330at 3343.853 kb on + strand, within SGL_RS17330at 3343.861 kb on - strand, within SGL_RS17330at 3343.874 kb on - strand, within SGL_RS17330at 3343.958 kb on + strand, within SGL_RS17330at 3343.992 kb on + strand, within SGL_RS17330at 3344.000 kb on - strand, within SGL_RS17330at 3344.000 kb on - strand, within SGL_RS17330at 3344.005 kb on - strand, within SGL_RS17330at 3344.101 kb on + strand, within SGL_RS17330at 3344.256 kb on + strand, within SGL_RS17330at 3344.743 kb on + strandat 3344.822 kb on + strandat 3344.858 kb on - strandat 3345.010 kb on - strandat 3345.060 kb on - strandat 3345.078 kb on + strandat 3345.089 kb on + strandat 3345.165 kb on - strand, within SGL_RS17335at 3345.203 kb on + strand, within SGL_RS17335at 3345.279 kb on + strand, within SGL_RS17335at 3345.336 kb on + strand, within SGL_RS17335at 3345.431 kb on + strand, within SGL_RS17335at 3345.505 kb on + strand, within SGL_RS17335at 3345.546 kb on - strand, within SGL_RS17335at 3345.683 kb on + strand, within SGL_RS17335at 3345.724 kb on + strandat 3345.757 kb on + strandat 3345.814 kb on + strandat 3345.867 kb on - strandat 3345.867 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate (N)
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3,342,219 - SGL_RS17325 0.22 -0.8
3,342,254 + SGL_RS17325 0.30 +0.6
3,342,763 + -0.3
3,342,840 - +0.5
3,342,918 + -5.8
3,342,918 + -4.5
3,342,974 + -0.0
3,342,988 - -3.5
3,342,993 + -7.2
3,343,003 - -4.3
3,343,095 + SGL_RS17330 0.11 -6.0
3,343,131 - SGL_RS17330 0.13 -5.1
3,343,361 - SGL_RS17330 0.24 -6.0
3,343,400 - SGL_RS17330 0.26 -3.4
3,343,402 - SGL_RS17330 0.26 -5.4
3,343,407 - SGL_RS17330 0.26 -6.3
3,343,412 - SGL_RS17330 0.27 -4.4
3,343,725 + SGL_RS17330 0.42 -5.9
3,343,754 + SGL_RS17330 0.43 -5.8
3,343,809 + SGL_RS17330 0.46 -6.0
3,343,853 + SGL_RS17330 0.48 -4.7
3,343,861 - SGL_RS17330 0.48 -5.2
3,343,874 - SGL_RS17330 0.49 -2.0
3,343,958 + SGL_RS17330 0.53 -5.3
3,343,992 + SGL_RS17330 0.54 -5.6
3,344,000 - SGL_RS17330 0.55 -5.4
3,344,000 - SGL_RS17330 0.55 -5.1
3,344,005 - SGL_RS17330 0.55 -5.4
3,344,101 + SGL_RS17330 0.60 -5.6
3,344,256 + SGL_RS17330 0.67 -5.8
3,344,743 + -5.6
3,344,822 + -5.8
3,344,858 - -6.2
3,345,010 - +0.6
3,345,060 - +0.0
3,345,078 + -0.2
3,345,089 + -0.4
3,345,165 - SGL_RS17335 0.18 +0.1
3,345,203 + SGL_RS17335 0.23 +0.5
3,345,279 + SGL_RS17335 0.33 +0.1
3,345,336 + SGL_RS17335 0.41 +0.4
3,345,431 + SGL_RS17335 0.54 +0.1
3,345,505 + SGL_RS17335 0.63 -0.2
3,345,546 - SGL_RS17335 0.69 -0.1
3,345,683 + SGL_RS17335 0.87 -0.1
3,345,724 + +0.7
3,345,757 + +0.1
3,345,814 + +0.2
3,345,867 - +0.1
3,345,867 - +0.2

Or see this region's nucleotide sequence