Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS16695 and SGL_RS16700 are separated by 131 nucleotides SGL_RS16700 and SGL_RS16705 overlap by 4 nucleotides SGL_RS16705 and SGL_RS16710 are separated by 42 nucleotides
SGL_RS16695: SGL_RS16695 - magnesium/cobalt transporter CorA, at 3,202,699 to 3,203,862
_RS16695
SGL_RS16700: SGL_RS16700 - polyprenyl diphosphate synthase, at 3,203,994 to 3,204,743
_RS16700
SGL_RS16705: SGL_RS16705 - diadenylate cyclase CdaA, at 3,204,740 to 3,205,651
_RS16705
SGL_RS16710: SGL_RS16710 - diaminopimelate decarboxylase, at 3,205,694 to 3,207,103
_RS16710
Position (kb) 3204
3205
3206 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 3203.770 kb on - strand at 3203.786 kb on + strand at 3203.928 kb on - strand at 3203.992 kb on + strand at 3204.954 kb on - strand, within SGL_RS16705 at 3205.329 kb on - strand, within SGL_RS16705 at 3205.329 kb on - strand, within SGL_RS16705 at 3205.364 kb on + strand, within SGL_RS16705 at 3205.415 kb on + strand, within SGL_RS16705 at 3205.423 kb on - strand, within SGL_RS16705 at 3205.430 kb on - strand, within SGL_RS16705 at 3205.707 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 3,203,770 - +0.4 3,203,786 + +0.8 3,203,928 - +0.5 3,203,992 + +0.4 3,204,954 - SGL_RS16705 0.23 -5.0 3,205,329 - SGL_RS16705 0.65 -5.4 3,205,329 - SGL_RS16705 0.65 -5.0 3,205,364 + SGL_RS16705 0.68 -5.2 3,205,415 + SGL_RS16705 0.74 -6.5 3,205,423 - SGL_RS16705 0.75 -5.2 3,205,430 - SGL_RS16705 0.76 -4.3 3,205,707 - -0.2
Or see this region's nucleotide sequence