Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14435

Experiment: nitrate (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14425 and SGL_RS14430 overlap by 79 nucleotidesSGL_RS14430 and SGL_RS14435 are separated by 2 nucleotidesSGL_RS14435 and SGL_RS14440 are separated by 0 nucleotidesSGL_RS14440 and SGL_RS14445 are separated by 5 nucleotides SGL_RS14425: SGL_RS14425 - energy-coupling factor ABC transporter ATP-binding protein, at 2,691,528 to 2,692,382 _RS14425 SGL_RS14430: SGL_RS14430 - cobalt ECF transporter T component CbiQ, at 2,692,304 to 2,693,077 _RS14430 SGL_RS14435: SGL_RS14435 - cobalt transporter CbiM, at 2,693,080 to 2,693,724 _RS14435 SGL_RS14440: SGL_RS14440 - carboxypeptidase-like regulatory domain-containing protein, at 2,693,725 to 2,694,255 _RS14440 SGL_RS14445: SGL_RS14445 - hypothetical protein, at 2,694,261 to 2,695,145 _RS14445 Position (kb) 2693 2694Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 2692.146 kb on + strand, within SGL_RS14425at 2692.220 kb on - strand, within SGL_RS14425at 2692.317 kb on - strandat 2692.364 kb on + strandat 2692.372 kb on - strandat 2692.440 kb on + strand, within SGL_RS14430at 2692.440 kb on + strand, within SGL_RS14430at 2692.468 kb on + strand, within SGL_RS14430at 2692.476 kb on - strand, within SGL_RS14430at 2692.476 kb on - strand, within SGL_RS14430at 2692.543 kb on + strand, within SGL_RS14430at 2692.551 kb on - strand, within SGL_RS14430at 2692.564 kb on - strand, within SGL_RS14430at 2692.645 kb on - strand, within SGL_RS14430at 2692.970 kb on + strand, within SGL_RS14430at 2693.046 kb on + strandat 2693.067 kb on + strandat 2693.437 kb on + strand, within SGL_RS14435at 2693.506 kb on - strand, within SGL_RS14435at 2693.737 kb on - strandat 2693.737 kb on - strandat 2693.920 kb on - strand, within SGL_RS14440at 2693.953 kb on - strand, within SGL_RS14440at 2694.412 kb on - strand, within SGL_RS14445at 2694.423 kb on + strand, within SGL_RS14445at 2694.628 kb on + strand, within SGL_RS14445at 2694.678 kb on + strand, within SGL_RS14445at 2694.678 kb on + strand, within SGL_RS14445at 2694.686 kb on - strand, within SGL_RS14445

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate (N)
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2,692,146 + SGL_RS14425 0.72 -1.9
2,692,220 - SGL_RS14425 0.81 -3.4
2,692,317 - -0.1
2,692,364 + -5.2
2,692,372 - -3.8
2,692,440 + SGL_RS14430 0.18 -3.4
2,692,440 + SGL_RS14430 0.18 -4.3
2,692,468 + SGL_RS14430 0.21 -4.1
2,692,476 - SGL_RS14430 0.22 -4.1
2,692,476 - SGL_RS14430 0.22 -4.4
2,692,543 + SGL_RS14430 0.31 -5.1
2,692,551 - SGL_RS14430 0.32 -6.7
2,692,564 - SGL_RS14430 0.34 -3.8
2,692,645 - SGL_RS14430 0.44 -3.8
2,692,970 + SGL_RS14430 0.86 -4.6
2,693,046 + -1.2
2,693,067 + +0.1
2,693,437 + SGL_RS14435 0.55 -4.7
2,693,506 - SGL_RS14435 0.66 -4.2
2,693,737 - -7.7
2,693,737 - -3.2
2,693,920 - SGL_RS14440 0.37 -2.9
2,693,953 - SGL_RS14440 0.43 -2.4
2,694,412 - SGL_RS14445 0.17 -6.5
2,694,423 + SGL_RS14445 0.18 -1.9
2,694,628 + SGL_RS14445 0.41 -3.5
2,694,678 + SGL_RS14445 0.47 -2.9
2,694,678 + SGL_RS14445 0.47 -1.9
2,694,686 - SGL_RS14445 0.48 -3.9

Or see this region's nucleotide sequence