Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS13765 and SGL_RS13770 are separated by 153 nucleotides SGL_RS13770 and SGL_RS13775 are separated by 164 nucleotides SGL_RS13775 and SGL_RS13780 are separated by 310 nucleotides
SGL_RS13765: SGL_RS13765 - glycolate oxidase subunit GlcD, at 2,553,961 to 2,555,439
_RS13765
SGL_RS13770: SGL_RS13770 - DUF3082 domain-containing protein, at 2,555,593 to 2,555,916
_RS13770
SGL_RS13775: SGL_RS13775 - hypothetical protein, at 2,556,081 to 2,556,503
_RS13775
SGL_RS13780: SGL_RS13780 - WD40 repeat domain-containing protein, at 2,556,814 to 2,558,319
_RS13780
Position (kb)
2555
2556 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2554.934 kb on - strand, within SGL_RS13765 at 2555.043 kb on - strand, within SGL_RS13765 at 2555.118 kb on - strand, within SGL_RS13765 at 2555.181 kb on - strand, within SGL_RS13765 at 2555.196 kb on - strand, within SGL_RS13765 at 2555.287 kb on + strand, within SGL_RS13765 at 2555.820 kb on - strand, within SGL_RS13770 at 2556.665 kb on + strand at 2556.683 kb on - strand at 2556.870 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 2,554,934 - SGL_RS13765 0.66 -0.5 2,555,043 - SGL_RS13765 0.73 -0.6 2,555,118 - SGL_RS13765 0.78 -0.0 2,555,181 - SGL_RS13765 0.82 -0.5 2,555,196 - SGL_RS13765 0.84 -1.0 2,555,287 + SGL_RS13765 0.90 -0.3 2,555,820 - SGL_RS13770 0.70 -3.8 2,556,665 + -0.6 2,556,683 - +0.3 2,556,870 - +0.3
Or see this region's nucleotide sequence