Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS13550

Experiment: nitrate (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS13540 and SGL_RS13545 are separated by 238 nucleotidesSGL_RS13545 and SGL_RS13550 are separated by 258 nucleotidesSGL_RS13550 and SGL_RS13555 are separated by 218 nucleotides SGL_RS13540: SGL_RS13540 - hypothetical protein, at 2,509,162 to 2,509,584 _RS13540 SGL_RS13545: SGL_RS13545 - hypothetical protein, at 2,509,823 to 2,510,014 _RS13545 SGL_RS13550: SGL_RS13550 - long-chain acyl-[acyl-carrier-protein] reductase, at 2,510,273 to 2,511,295 _RS13550 SGL_RS13555: SGL_RS13555 - aldehyde oxygenase (deformylating), at 2,511,514 to 2,512,209 _RS13555 Position (kb) 2510 2511 2512Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 2509.377 kb on - strand, within SGL_RS13540at 2509.633 kb on + strandat 2509.734 kb on - strandat 2509.921 kb on + strand, within SGL_RS13545at 2510.224 kb on + strandat 2510.262 kb on + strandat 2510.265 kb on - strandat 2510.662 kb on - strand, within SGL_RS13550at 2511.038 kb on + strand, within SGL_RS13550at 2511.230 kb on + strandat 2511.238 kb on - strandat 2511.358 kb on + strandat 2511.366 kb on - strandat 2511.405 kb on + strandat 2511.429 kb on + strandat 2511.652 kb on + strand, within SGL_RS13555at 2511.788 kb on + strand, within SGL_RS13555at 2512.136 kb on - strand, within SGL_RS13555at 2512.232 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction nitrate (N)
remove
2,509,377 - SGL_RS13540 0.51 +0.2
2,509,633 + -0.6
2,509,734 - +0.6
2,509,921 + SGL_RS13545 0.51 -0.0
2,510,224 + +0.2
2,510,262 + +0.1
2,510,265 - +0.0
2,510,662 - SGL_RS13550 0.38 -5.2
2,511,038 + SGL_RS13550 0.75 -3.7
2,511,230 + -5.4
2,511,238 - -3.3
2,511,358 + -3.7
2,511,366 - -4.0
2,511,405 + +0.5
2,511,429 + -0.0
2,511,652 + SGL_RS13555 0.20 -6.5
2,511,788 + SGL_RS13555 0.39 -6.1
2,512,136 - SGL_RS13555 0.89 -5.8
2,512,232 - -6.0

Or see this region's nucleotide sequence