Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS13530 and SGL_RS13535 are separated by 114 nucleotides SGL_RS13535 and SGL_RS13540 are separated by 127 nucleotides SGL_RS13540 and SGL_RS13545 are separated by 238 nucleotides
SGL_RS13530: SGL_RS13530 - undecaprenyl-diphosphate phosphatase, at 2,507,382 to 2,508,362
_RS13530
SGL_RS13535: SGL_RS13535 - bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase, at 2,508,477 to 2,509,034
_RS13535
SGL_RS13540: SGL_RS13540 - hypothetical protein, at 2,509,162 to 2,509,584
_RS13540
SGL_RS13545: SGL_RS13545 - hypothetical protein, at 2,509,823 to 2,510,014
_RS13545
Position (kb)
2508
2509
2510 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2508.313 kb on + strand at 2508.405 kb on - strand at 2508.693 kb on + strand, within SGL_RS13535 at 2508.701 kb on - strand, within SGL_RS13535 at 2508.733 kb on + strand, within SGL_RS13535 at 2508.741 kb on - strand, within SGL_RS13535 at 2508.757 kb on - strand, within SGL_RS13535 at 2508.977 kb on + strand, within SGL_RS13535 at 2508.990 kb on + strand at 2509.158 kb on - strand at 2509.158 kb on - strand at 2509.377 kb on - strand, within SGL_RS13540 at 2509.633 kb on + strand at 2509.734 kb on - strand at 2509.921 kb on + strand, within SGL_RS13545
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 2,508,313 + -5.0 2,508,405 - -0.3 2,508,693 + SGL_RS13535 0.39 -4.1 2,508,701 - SGL_RS13535 0.40 -3.4 2,508,733 + SGL_RS13535 0.46 -2.7 2,508,741 - SGL_RS13535 0.47 -3.7 2,508,757 - SGL_RS13535 0.50 -2.4 2,508,977 + SGL_RS13535 0.90 -2.4 2,508,990 + -3.8 2,509,158 - +0.5 2,509,158 - +0.4 2,509,377 - SGL_RS13540 0.51 +0.2 2,509,633 + -0.6 2,509,734 - +0.6 2,509,921 + SGL_RS13545 0.51 -0.0
Or see this region's nucleotide sequence