Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS13535

Experiment: nitrate (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS13530 and SGL_RS13535 are separated by 114 nucleotidesSGL_RS13535 and SGL_RS13540 are separated by 127 nucleotidesSGL_RS13540 and SGL_RS13545 are separated by 238 nucleotides SGL_RS13530: SGL_RS13530 - undecaprenyl-diphosphate phosphatase, at 2,507,382 to 2,508,362 _RS13530 SGL_RS13535: SGL_RS13535 - bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase, at 2,508,477 to 2,509,034 _RS13535 SGL_RS13540: SGL_RS13540 - hypothetical protein, at 2,509,162 to 2,509,584 _RS13540 SGL_RS13545: SGL_RS13545 - hypothetical protein, at 2,509,823 to 2,510,014 _RS13545 Position (kb) 2508 2509 2510Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2508.313 kb on + strandat 2508.405 kb on - strandat 2508.693 kb on + strand, within SGL_RS13535at 2508.701 kb on - strand, within SGL_RS13535at 2508.733 kb on + strand, within SGL_RS13535at 2508.741 kb on - strand, within SGL_RS13535at 2508.757 kb on - strand, within SGL_RS13535at 2508.977 kb on + strand, within SGL_RS13535at 2508.990 kb on + strandat 2509.158 kb on - strandat 2509.158 kb on - strandat 2509.377 kb on - strand, within SGL_RS13540at 2509.633 kb on + strandat 2509.734 kb on - strandat 2509.921 kb on + strand, within SGL_RS13545

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate (N)
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2,508,313 + -5.0
2,508,405 - -0.3
2,508,693 + SGL_RS13535 0.39 -4.1
2,508,701 - SGL_RS13535 0.40 -3.4
2,508,733 + SGL_RS13535 0.46 -2.7
2,508,741 - SGL_RS13535 0.47 -3.7
2,508,757 - SGL_RS13535 0.50 -2.4
2,508,977 + SGL_RS13535 0.90 -2.4
2,508,990 + -3.8
2,509,158 - +0.5
2,509,158 - +0.4
2,509,377 - SGL_RS13540 0.51 +0.2
2,509,633 + -0.6
2,509,734 - +0.6
2,509,921 + SGL_RS13545 0.51 -0.0

Or see this region's nucleotide sequence