Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS08785 and SGL_RS08790 are separated by 126 nucleotides SGL_RS08790 and SGL_RS08795 overlap by 11 nucleotides
SGL_RS08785: SGL_RS08785 - GuaB3 family IMP dehydrogenase-related protein, at 1,475,555 to 1,476,718
_RS08785
SGL_RS08790: SGL_RS08790 - carbohydrate ABC transporter permease, at 1,476,845 to 1,477,657
_RS08790
SGL_RS08795: SGL_RS08795 - trans-acting enoyl reductase family protein, at 1,477,647 to 1,478,891
_RS08795
Position (kb)
1476
1477
1478 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 1476.753 kb on + strand at 1476.783 kb on - strand at 1476.791 kb on + strand at 1476.799 kb on - strand at 1476.814 kb on + strand at 1476.952 kb on - strand, within SGL_RS08790 at 1477.040 kb on + strand, within SGL_RS08790 at 1477.142 kb on + strand, within SGL_RS08790 at 1477.501 kb on + strand, within SGL_RS08790 at 1477.634 kb on - strand at 1477.685 kb on - strand at 1477.773 kb on + strand, within SGL_RS08795 at 1477.901 kb on - strand, within SGL_RS08795 at 1477.942 kb on - strand, within SGL_RS08795 at 1478.127 kb on - strand, within SGL_RS08795 at 1478.143 kb on - strand, within SGL_RS08795 at 1478.214 kb on - strand, within SGL_RS08795 at 1478.273 kb on + strand, within SGL_RS08795 at 1478.370 kb on - strand, within SGL_RS08795 at 1478.477 kb on - strand, within SGL_RS08795 at 1478.545 kb on + strand, within SGL_RS08795
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 1,476,753 + -0.2 1,476,783 - +0.0 1,476,791 + -0.3 1,476,799 - -0.3 1,476,814 + +0.0 1,476,952 - SGL_RS08790 0.13 -4.8 1,477,040 + SGL_RS08790 0.24 -5.5 1,477,142 + SGL_RS08790 0.37 -3.3 1,477,501 + SGL_RS08790 0.81 -3.3 1,477,634 - -4.1 1,477,685 - +0.1 1,477,773 + SGL_RS08795 0.10 +0.6 1,477,901 - SGL_RS08795 0.20 -0.3 1,477,942 - SGL_RS08795 0.24 +0.1 1,478,127 - SGL_RS08795 0.39 +0.2 1,478,143 - SGL_RS08795 0.40 -0.2 1,478,214 - SGL_RS08795 0.46 -0.7 1,478,273 + SGL_RS08795 0.50 +0.5 1,478,370 - SGL_RS08795 0.58 -0.2 1,478,477 - SGL_RS08795 0.67 -0.4 1,478,545 + SGL_RS08795 0.72 +0.3
Or see this region's nucleotide sequence