Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS08605

Experiment: nitrate (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS08600 and SGL_RS08605 are separated by 260 nucleotidesSGL_RS08605 and SGL_RS08610 are separated by 21 nucleotides SGL_RS08600: SGL_RS08600 - phosphoglycerate dehydrogenase, at 1,432,976 to 1,434,640 _RS08600 SGL_RS08605: SGL_RS08605 - DUF3120 domain-containing protein, at 1,434,901 to 1,435,623 _RS08605 SGL_RS08610: SGL_RS08610 - adenylate/guanylate cyclase domain-containing protein, at 1,435,645 to 1,436,658 _RS08610 Position (kb) 1434 1435 1436Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1434.722 kb on + strandat 1434.722 kb on + strandat 1434.745 kb on - strandat 1434.745 kb on - strandat 1434.890 kb on - strandat 1434.971 kb on - strandat 1435.146 kb on + strand, within SGL_RS08605at 1435.245 kb on - strand, within SGL_RS08605at 1435.257 kb on + strand, within SGL_RS08605at 1435.264 kb on + strand, within SGL_RS08605at 1435.333 kb on - strand, within SGL_RS08605at 1435.444 kb on - strand, within SGL_RS08605at 1435.497 kb on - strand, within SGL_RS08605at 1435.808 kb on + strand, within SGL_RS08610at 1435.941 kb on + strand, within SGL_RS08610at 1435.949 kb on - strand, within SGL_RS08610at 1436.072 kb on - strand, within SGL_RS08610at 1436.077 kb on + strand, within SGL_RS08610at 1436.085 kb on - strand, within SGL_RS08610at 1436.146 kb on - strand, within SGL_RS08610at 1436.305 kb on + strand, within SGL_RS08610at 1436.384 kb on + strand, within SGL_RS08610at 1436.502 kb on - strand, within SGL_RS08610at 1436.550 kb on + strand, within SGL_RS08610at 1436.558 kb on - strandat 1436.601 kb on - strandat 1436.619 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate (N)
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1,434,722 + +0.0
1,434,722 + +0.1
1,434,745 - +0.3
1,434,745 - -0.1
1,434,890 - -2.7
1,434,971 - -0.6
1,435,146 + SGL_RS08605 0.34 -4.1
1,435,245 - SGL_RS08605 0.48 -4.9
1,435,257 + SGL_RS08605 0.49 -3.5
1,435,264 + SGL_RS08605 0.50 -2.1
1,435,333 - SGL_RS08605 0.60 -4.2
1,435,444 - SGL_RS08605 0.75 -6.3
1,435,497 - SGL_RS08605 0.82 -4.8
1,435,808 + SGL_RS08610 0.16 +0.4
1,435,941 + SGL_RS08610 0.29 +0.5
1,435,949 - SGL_RS08610 0.30 +0.6
1,436,072 - SGL_RS08610 0.42 +0.9
1,436,077 + SGL_RS08610 0.43 +0.5
1,436,085 - SGL_RS08610 0.43 +0.5
1,436,146 - SGL_RS08610 0.49 +0.5
1,436,305 + SGL_RS08610 0.65 +0.0
1,436,384 + SGL_RS08610 0.73 +0.1
1,436,502 - SGL_RS08610 0.85 +0.5
1,436,550 + SGL_RS08610 0.89 +0.4
1,436,558 - +0.6
1,436,601 - +0.2
1,436,619 - +0.2

Or see this region's nucleotide sequence