Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS08535

Experiment: nitrate (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS08530 and SGL_RS08535 are separated by 20 nucleotidesSGL_RS08535 and SGL_RS08540 are separated by 36 nucleotides SGL_RS08530: SGL_RS08530 - type I DNA topoisomerase, at 1,414,126 to 1,416,822 _RS08530 SGL_RS08535: SGL_RS08535 - NIL domain-containing protein, at 1,416,843 to 1,417,247 _RS08535 SGL_RS08540: SGL_RS08540 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 1,417,284 to 1,418,681 _RS08540 Position (kb) 1416 1417 1418Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1416.557 kb on + strandat 1416.802 kb on - strandat 1416.817 kb on + strandat 1417.083 kb on + strand, within SGL_RS08535at 1417.091 kb on - strand, within SGL_RS08535at 1417.219 kb on - strandat 1417.450 kb on - strand, within SGL_RS08540at 1417.452 kb on + strand, within SGL_RS08540at 1417.572 kb on + strand, within SGL_RS08540at 1417.692 kb on + strand, within SGL_RS08540at 1417.823 kb on - strand, within SGL_RS08540at 1417.860 kb on + strand, within SGL_RS08540at 1417.943 kb on - strand, within SGL_RS08540at 1417.989 kb on + strand, within SGL_RS08540at 1417.994 kb on - strand, within SGL_RS08540

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate (N)
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1,416,557 + -0.6
1,416,802 - -0.3
1,416,817 + -0.4
1,417,083 + SGL_RS08535 0.59 -5.7
1,417,091 - SGL_RS08535 0.61 -4.0
1,417,219 - -5.3
1,417,450 - SGL_RS08540 0.12 +0.3
1,417,452 + SGL_RS08540 0.12 +0.3
1,417,572 + SGL_RS08540 0.21 +0.1
1,417,692 + SGL_RS08540 0.29 +0.1
1,417,823 - SGL_RS08540 0.39 +0.6
1,417,860 + SGL_RS08540 0.41 +0.5
1,417,943 - SGL_RS08540 0.47 -0.3
1,417,989 + SGL_RS08540 0.50 +0.6
1,417,994 - SGL_RS08540 0.51 +0.1

Or see this region's nucleotide sequence