Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS07930 and SGL_RS07935 are separated by 16 nucleotides SGL_RS07935 and SGL_RS07940 are separated by 1 nucleotides SGL_RS07940 and SGL_RS07945 are separated by 98 nucleotides
SGL_RS07930: SGL_RS07930 - hypothetical protein, at 1,293,398 to 1,295,551
_RS07930
SGL_RS07935: SGL_RS07935 - hypothetical protein, at 1,295,568 to 1,296,380
_RS07935
SGL_RS07940: SGL_RS07940 - type II secretion system protein, at 1,296,382 to 1,296,894
_RS07940
SGL_RS07945: SGL_RS07945 - type IV pilin-like G/H family protein, at 1,296,993 to 1,297,499
_RS07945
Position (kb) 1295
1296
1297 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 1294.629 kb on - strand, within SGL_RS07930 at 1294.739 kb on + strand, within SGL_RS07930 at 1294.900 kb on - strand, within SGL_RS07930 at 1294.917 kb on + strand, within SGL_RS07930 at 1295.068 kb on + strand, within SGL_RS07930 at 1295.074 kb on + strand, within SGL_RS07930 at 1295.201 kb on + strand, within SGL_RS07930 at 1295.247 kb on + strand, within SGL_RS07930 at 1295.287 kb on - strand, within SGL_RS07930 at 1295.620 kb on - strand at 1295.817 kb on + strand, within SGL_RS07935 at 1295.838 kb on + strand, within SGL_RS07935 at 1296.079 kb on - strand, within SGL_RS07935 at 1296.398 kb on - strand at 1296.474 kb on + strand, within SGL_RS07940 at 1296.773 kb on + strand, within SGL_RS07940 at 1296.773 kb on + strand, within SGL_RS07940 at 1297.108 kb on - strand, within SGL_RS07945 at 1297.163 kb on - strand, within SGL_RS07945 at 1297.366 kb on + strand, within SGL_RS07945
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 1,294,629 - SGL_RS07930 0.57 -0.3 1,294,739 + SGL_RS07930 0.62 -0.9 1,294,900 - SGL_RS07930 0.70 -1.0 1,294,917 + SGL_RS07930 0.71 -0.5 1,295,068 + SGL_RS07930 0.78 -1.0 1,295,074 + SGL_RS07930 0.78 -0.9 1,295,201 + SGL_RS07930 0.84 -0.6 1,295,247 + SGL_RS07930 0.86 -1.1 1,295,287 - SGL_RS07930 0.88 -1.1 1,295,620 - -0.8 1,295,817 + SGL_RS07935 0.31 -4.8 1,295,838 + SGL_RS07935 0.33 -4.0 1,296,079 - SGL_RS07935 0.63 -3.3 1,296,398 - +0.0 1,296,474 + SGL_RS07940 0.18 -0.5 1,296,773 + SGL_RS07940 0.76 -1.4 1,296,773 + SGL_RS07940 0.76 -0.6 1,297,108 - SGL_RS07945 0.23 -1.2 1,297,163 - SGL_RS07945 0.34 +1.0 1,297,366 + SGL_RS07945 0.74 -1.3
Or see this region's nucleotide sequence