Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS07105

Experiment: nitrate (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS07100 and SGL_RS07105 are separated by 241 nucleotidesSGL_RS07105 and SGL_RS07110 are separated by 133 nucleotides SGL_RS07100: SGL_RS07100 - glycogen/starch/alpha-glucan phosphorylase, at 1,117,143 to 1,119,674 _RS07100 SGL_RS07105: SGL_RS07105 - precorrin-6Y C5,15-methyltransferase subunit CbiT, at 1,119,916 to 1,120,509 _RS07105 SGL_RS07110: SGL_RS07110 - phosphatidate cytidylyltransferase, at 1,120,643 to 1,121,524 _RS07110 Position (kb) 1119 1120 1121Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1118.957 kb on + strand, within SGL_RS07100at 1118.992 kb on - strand, within SGL_RS07100at 1119.013 kb on + strand, within SGL_RS07100at 1119.043 kb on - strand, within SGL_RS07100at 1119.043 kb on - strand, within SGL_RS07100at 1119.290 kb on + strand, within SGL_RS07100at 1119.599 kb on - strandat 1119.642 kb on + strandat 1120.098 kb on - strand, within SGL_RS07105at 1120.098 kb on - strand, within SGL_RS07105at 1120.173 kb on + strand, within SGL_RS07105at 1120.203 kb on - strand, within SGL_RS07105at 1120.218 kb on - strand, within SGL_RS07105at 1120.500 kb on - strandat 1120.530 kb on + strandat 1120.538 kb on - strandat 1120.538 kb on - strandat 1120.538 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate (N)
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1,118,957 + SGL_RS07100 0.72 -0.7
1,118,992 - SGL_RS07100 0.73 -0.6
1,119,013 + SGL_RS07100 0.74 -1.6
1,119,043 - SGL_RS07100 0.75 -0.6
1,119,043 - SGL_RS07100 0.75 -0.3
1,119,290 + SGL_RS07100 0.85 -1.7
1,119,599 - -0.8
1,119,642 + -0.7
1,120,098 - SGL_RS07105 0.31 -2.5
1,120,098 - SGL_RS07105 0.31 -4.1
1,120,173 + SGL_RS07105 0.43 -2.2
1,120,203 - SGL_RS07105 0.48 -2.5
1,120,218 - SGL_RS07105 0.51 -2.4
1,120,500 - -1.1
1,120,530 + +0.3
1,120,538 - +0.1
1,120,538 - +0.8
1,120,538 - -3.7

Or see this region's nucleotide sequence