Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS06345 and SGL_RS06350 are separated by 377 nucleotides SGL_RS06350 and SGL_RS06355 are separated by 158 nucleotides SGL_RS06355 and SGL_RS06360 are separated by 59 nucleotides
SGL_RS06345: SGL_RS06345 - alpha-ketoacid dehydrogenase subunit beta, at 954,453 to 955,427
_RS06345
SGL_RS06350: SGL_RS06350 - BMC domain-containing protein, at 955,805 to 956,116
_RS06350
SGL_RS06355: SGL_RS06355 - carbon dioxide-concentrating mechanism protein CcmK, at 956,275 to 956,613
_RS06355
SGL_RS06360: SGL_RS06360 - glycerate kinase, at 956,673 to 957,788
_RS06360
Position (kb) 956
957 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 955.749 kb on - strand at 955.841 kb on - strand, within SGL_RS06350 at 956.014 kb on - strand, within SGL_RS06350 at 956.146 kb on + strand at 956.161 kb on - strand at 956.266 kb on - strand at 956.349 kb on + strand, within SGL_RS06355 at 956.349 kb on + strand, within SGL_RS06355 at 956.408 kb on + strand, within SGL_RS06355 at 956.493 kb on + strand, within SGL_RS06355 at 956.637 kb on + strand at 956.778 kb on + strand at 956.817 kb on - strand, within SGL_RS06360 at 956.867 kb on - strand, within SGL_RS06360 at 956.926 kb on - strand, within SGL_RS06360 at 957.093 kb on + strand, within SGL_RS06360 at 957.273 kb on + strand, within SGL_RS06360 at 957.273 kb on + strand, within SGL_RS06360 at 957.395 kb on + strand, within SGL_RS06360 at 957.497 kb on + strand, within SGL_RS06360 at 957.497 kb on + strand, within SGL_RS06360 at 957.560 kb on + strand, within SGL_RS06360
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 955,749 - -1.0 955,841 - SGL_RS06350 0.12 -1.6 956,014 - SGL_RS06350 0.67 -1.5 956,146 + +0.1 956,161 - -0.1 956,266 - -2.1 956,349 + SGL_RS06355 0.22 -4.6 956,349 + SGL_RS06355 0.22 -3.5 956,408 + SGL_RS06355 0.39 -4.4 956,493 + SGL_RS06355 0.64 -4.8 956,637 + +0.2 956,778 + +0.2 956,817 - SGL_RS06360 0.13 -0.4 956,867 - SGL_RS06360 0.17 -0.0 956,926 - SGL_RS06360 0.23 +0.1 957,093 + SGL_RS06360 0.38 -0.2 957,273 + SGL_RS06360 0.54 +0.3 957,273 + SGL_RS06360 0.54 +0.2 957,395 + SGL_RS06360 0.65 +0.1 957,497 + SGL_RS06360 0.74 +0.2 957,497 + SGL_RS06360 0.74 +0.1 957,560 + SGL_RS06360 0.79 +0.4
Or see this region's nucleotide sequence