Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS05880

Experiment: nitrate (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS05870 and SGL_RS05875 are separated by 91 nucleotidesSGL_RS05875 and SGL_RS05880 are separated by 180 nucleotidesSGL_RS05880 and SGL_RS05885 are separated by 263 nucleotides SGL_RS05870: SGL_RS05870 - DUF1823 family protein, at 845,482 to 845,874 _RS05870 SGL_RS05875: SGL_RS05875 - c-type cytochrome, at 845,966 to 846,328 _RS05875 SGL_RS05880: SGL_RS05880 - sugar ABC transporter substrate-binding protein, at 846,509 to 847,810 _RS05880 SGL_RS05885: SGL_RS05885 - acetylglutamate kinase, at 848,074 to 848,967 _RS05885 Position (kb) 846 847 848Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 845.571 kb on - strand, within SGL_RS05870at 845.669 kb on - strand, within SGL_RS05870at 845.758 kb on + strand, within SGL_RS05870at 845.914 kb on + strandat 846.154 kb on + strand, within SGL_RS05875at 846.369 kb on - strandat 846.391 kb on - strandat 846.779 kb on - strand, within SGL_RS05880at 846.815 kb on - strand, within SGL_RS05880at 846.876 kb on + strand, within SGL_RS05880at 846.876 kb on - strand, within SGL_RS05880at 847.184 kb on + strand, within SGL_RS05880at 847.301 kb on - strand, within SGL_RS05880at 847.690 kb on + strandat 847.741 kb on - strandat 847.969 kb on + strandat 847.980 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction nitrate (N)
remove
845,571 - SGL_RS05870 0.23 -0.1
845,669 - SGL_RS05870 0.48 -0.1
845,758 + SGL_RS05870 0.70 +0.3
845,914 + -0.8
846,154 + SGL_RS05875 0.52 -0.0
846,369 - +0.8
846,391 - +0.2
846,779 - SGL_RS05880 0.21 -5.5
846,815 - SGL_RS05880 0.24 -0.5
846,876 + SGL_RS05880 0.28 -5.1
846,876 - SGL_RS05880 0.28 -5.8
847,184 + SGL_RS05880 0.52 -3.9
847,301 - SGL_RS05880 0.61 -4.6
847,690 + -5.2
847,741 - -4.5
847,969 + +0.1
847,980 + -0.1

Or see this region's nucleotide sequence