Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS05475 and SGL_RS05480 overlap by 79 nucleotides SGL_RS05480 and SGL_RS05485 are separated by 60 nucleotides SGL_RS05485 and SGL_RS05490 overlap by 4 nucleotides SGL_RS05490 and SGL_RS05495 are separated by 208 nucleotides
SGL_RS05475: SGL_RS05475 - glycosyltransferase family 39 protein, at 772,517 to 773,905
_RS05475
SGL_RS05480: SGL_RS05480 - FAD-dependent oxidoreductase, at 773,827 to 775,626
_RS05480
SGL_RS05485: SGL_RS05485 - putative toxin-antitoxin system toxin component, PIN family, at 775,687 to 776,061
_RS05485
SGL_RS05490: SGL_RS05490 - hypothetical protein, at 776,058 to 776,342
_RS05490
SGL_RS05495: SGL_RS05495 - hypothetical protein, at 776,551 to 776,937
_RS05495
Position (kb) 773
774
775
776 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 772.852 kb on + strand, within SGL_RS05475 at 772.934 kb on + strand, within SGL_RS05475 at 772.934 kb on - strand, within SGL_RS05475 at 772.971 kb on + strand, within SGL_RS05475 at 773.206 kb on - strand, within SGL_RS05475 at 773.315 kb on + strand, within SGL_RS05475 at 773.368 kb on - strand, within SGL_RS05475 at 773.416 kb on + strand, within SGL_RS05475 at 773.429 kb on + strand, within SGL_RS05475 at 773.429 kb on + strand, within SGL_RS05475 at 773.439 kb on + strand, within SGL_RS05475 at 773.439 kb on - strand, within SGL_RS05475 at 773.471 kb on - strand, within SGL_RS05475 at 773.498 kb on + strand, within SGL_RS05475 at 773.600 kb on + strand, within SGL_RS05475 at 773.637 kb on + strand, within SGL_RS05475 at 773.728 kb on - strand, within SGL_RS05475 at 774.122 kb on - strand, within SGL_RS05480 at 774.308 kb on + strand, within SGL_RS05480 at 774.329 kb on + strand, within SGL_RS05480 at 774.410 kb on - strand, within SGL_RS05480 at 774.412 kb on - strand, within SGL_RS05480 at 775.044 kb on + strand, within SGL_RS05480 at 775.054 kb on - strand, within SGL_RS05480 at 775.476 kb on + strand at 775.489 kb on + strand at 775.530 kb on + strand at 775.882 kb on - strand, within SGL_RS05485 at 776.016 kb on - strand, within SGL_RS05485 at 776.152 kb on + strand, within SGL_RS05490 at 776.285 kb on + strand, within SGL_RS05490
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 772,852 + SGL_RS05475 0.24 +0.0 772,934 + SGL_RS05475 0.30 +0.2 772,934 - SGL_RS05475 0.30 -0.6 772,971 + SGL_RS05475 0.33 -0.2 773,206 - SGL_RS05475 0.50 -0.0 773,315 + SGL_RS05475 0.57 +0.2 773,368 - SGL_RS05475 0.61 +0.2 773,416 + SGL_RS05475 0.65 -0.2 773,429 + SGL_RS05475 0.66 +0.2 773,429 + SGL_RS05475 0.66 -0.2 773,439 + SGL_RS05475 0.66 +0.2 773,439 - SGL_RS05475 0.66 +0.4 773,471 - SGL_RS05475 0.69 -1.0 773,498 + SGL_RS05475 0.71 +0.5 773,600 + SGL_RS05475 0.78 +0.8 773,637 + SGL_RS05475 0.81 +0.3 773,728 - SGL_RS05475 0.87 -0.1 774,122 - SGL_RS05480 0.16 -1.3 774,308 + SGL_RS05480 0.27 -2.1 774,329 + SGL_RS05480 0.28 -3.6 774,410 - SGL_RS05480 0.32 -3.3 774,412 - SGL_RS05480 0.33 -3.6 775,044 + SGL_RS05480 0.68 -4.5 775,054 - SGL_RS05480 0.68 -1.5 775,476 + -3.8 775,489 + -2.9 775,530 + -3.6 775,882 - SGL_RS05485 0.52 -0.1 776,016 - SGL_RS05485 0.88 +0.4 776,152 + SGL_RS05490 0.33 -0.1 776,285 + SGL_RS05490 0.80 -0.0
Or see this region's nucleotide sequence