Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS05390

Experiment: nitrate (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS05375 and SGL_RS05380 overlap by 4 nucleotidesSGL_RS05380 and SGL_RS05385 overlap by 8 nucleotidesSGL_RS05385 and SGL_RS05390 overlap by 4 nucleotidesSGL_RS05390 and SGL_RS05395 are separated by 247 nucleotides SGL_RS05375: SGL_RS05375 - hypothetical protein, at 751,381 to 751,674 _RS05375 SGL_RS05380: SGL_RS05380 - monovalent cation/H(+) antiporter subunit G, at 751,671 to 751,967 _RS05380 SGL_RS05385: SGL_RS05385 - DUF4040 domain-containing protein, at 751,960 to 752,535 _RS05385 SGL_RS05390: SGL_RS05390 - Na(+)/H(+) antiporter subunit B, at 752,532 to 753,179 _RS05390 SGL_RS05395: SGL_RS05395 - DUF58 domain-containing protein, at 753,427 to 754,734 _RS05395 Position (kb) 752 753 754Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 751.566 kb on - strand, within SGL_RS05375at 751.811 kb on + strand, within SGL_RS05380at 751.818 kb on - strand, within SGL_RS05380at 751.931 kb on - strand, within SGL_RS05380at 751.942 kb on - strandat 752.097 kb on + strand, within SGL_RS05385at 752.105 kb on - strand, within SGL_RS05385at 752.105 kb on - strand, within SGL_RS05385at 752.109 kb on + strand, within SGL_RS05385at 752.109 kb on + strand, within SGL_RS05385at 752.109 kb on + strand, within SGL_RS05385at 752.117 kb on - strand, within SGL_RS05385at 752.125 kb on - strand, within SGL_RS05385at 752.135 kb on - strand, within SGL_RS05385at 752.197 kb on - strand, within SGL_RS05385at 752.282 kb on - strand, within SGL_RS05385at 752.284 kb on - strand, within SGL_RS05385at 752.371 kb on + strand, within SGL_RS05385at 752.378 kb on - strand, within SGL_RS05385at 752.506 kb on + strandat 752.506 kb on + strandat 752.506 kb on + strandat 752.627 kb on + strand, within SGL_RS05390at 752.633 kb on + strand, within SGL_RS05390at 752.814 kb on + strand, within SGL_RS05390at 752.827 kb on - strand, within SGL_RS05390at 752.897 kb on - strand, within SGL_RS05390at 752.973 kb on - strand, within SGL_RS05390at 753.095 kb on + strand, within SGL_RS05390at 753.188 kb on + strandat 753.193 kb on + strandat 753.201 kb on - strandat 753.251 kb on - strandat 753.331 kb on - strandat 753.431 kb on - strandat 753.431 kb on - strandat 753.455 kb on + strandat 753.743 kb on - strand, within SGL_RS05395at 753.743 kb on - strand, within SGL_RS05395at 753.745 kb on + strand, within SGL_RS05395at 753.794 kb on - strand, within SGL_RS05395at 753.822 kb on - strand, within SGL_RS05395at 753.875 kb on + strand, within SGL_RS05395at 753.883 kb on - strand, within SGL_RS05395at 753.965 kb on + strand, within SGL_RS05395at 753.965 kb on + strand, within SGL_RS05395at 753.973 kb on - strand, within SGL_RS05395

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate (N)
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751,566 - SGL_RS05375 0.63 -4.6
751,811 + SGL_RS05380 0.47 -4.5
751,818 - SGL_RS05380 0.49 -4.9
751,931 - SGL_RS05380 0.88 -6.5
751,942 - -2.1
752,097 + SGL_RS05385 0.24 -6.5
752,105 - SGL_RS05385 0.25 -5.8
752,105 - SGL_RS05385 0.25 -6.1
752,109 + SGL_RS05385 0.26 -4.1
752,109 + SGL_RS05385 0.26 -2.8
752,109 + SGL_RS05385 0.26 -5.8
752,117 - SGL_RS05385 0.27 -6.4
752,125 - SGL_RS05385 0.29 -6.3
752,135 - SGL_RS05385 0.30 -5.8
752,197 - SGL_RS05385 0.41 -6.0
752,282 - SGL_RS05385 0.56 -5.6
752,284 - SGL_RS05385 0.56 -4.8
752,371 + SGL_RS05385 0.71 -6.3
752,378 - SGL_RS05385 0.73 -5.2
752,506 + -7.0
752,506 + -5.8
752,506 + -6.0
752,627 + SGL_RS05390 0.15 -6.5
752,633 + SGL_RS05390 0.16 -6.0
752,814 + SGL_RS05390 0.44 -4.6
752,827 - SGL_RS05390 0.46 -6.6
752,897 - SGL_RS05390 0.56 -5.4
752,973 - SGL_RS05390 0.68 -5.1
753,095 + SGL_RS05390 0.87 -5.7
753,188 + +0.4
753,193 + +0.1
753,201 - +0.4
753,251 - -0.0
753,331 - -0.1
753,431 - +0.4
753,431 - -0.1
753,455 + -0.3
753,743 - SGL_RS05395 0.24 -0.2
753,743 - SGL_RS05395 0.24 +0.4
753,745 + SGL_RS05395 0.24 -0.2
753,794 - SGL_RS05395 0.28 +0.0
753,822 - SGL_RS05395 0.30 +0.2
753,875 + SGL_RS05395 0.34 -0.6
753,883 - SGL_RS05395 0.35 +0.7
753,965 + SGL_RS05395 0.41 -0.1
753,965 + SGL_RS05395 0.41 +0.0
753,973 - SGL_RS05395 0.42 -0.2

Or see this region's nucleotide sequence