Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS03965 and SGL_RS03970 overlap by 21 nucleotides SGL_RS03970 and SGL_RS03975 are separated by 116 nucleotides
SGL_RS03965: SGL_RS03965 - R3H domain-containing nucleic acid-binding protein, at 442,164 to 443,933
_RS03965
SGL_RS03970: SGL_RS03970 - thiamine phosphate synthase, at 443,913 to 444,944
_RS03970
SGL_RS03975: SGL_RS03975 - BtpA/SgcQ family protein, at 445,061 to 445,924
_RS03975
Position (kb) 443
444
445 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 442.940 kb on + strand, within SGL_RS03965 at 443.076 kb on + strand, within SGL_RS03965 at 443.093 kb on - strand, within SGL_RS03965 at 443.198 kb on + strand, within SGL_RS03965 at 443.358 kb on + strand, within SGL_RS03965 at 443.363 kb on + strand, within SGL_RS03965 at 443.371 kb on - strand, within SGL_RS03965 at 443.371 kb on - strand, within SGL_RS03965 at 443.371 kb on - strand, within SGL_RS03965 at 443.525 kb on + strand, within SGL_RS03965 at 443.561 kb on + strand, within SGL_RS03965 at 443.926 kb on - strand at 443.966 kb on + strand at 444.013 kb on - strand at 444.018 kb on - strand, within SGL_RS03970 at 444.072 kb on - strand, within SGL_RS03970 at 444.144 kb on + strand, within SGL_RS03970 at 444.152 kb on - strand, within SGL_RS03970 at 444.161 kb on + strand, within SGL_RS03970 at 444.426 kb on - strand, within SGL_RS03970 at 444.568 kb on + strand, within SGL_RS03970 at 444.623 kb on - strand, within SGL_RS03970 at 444.664 kb on - strand, within SGL_RS03970 at 444.783 kb on - strand, within SGL_RS03970 at 444.899 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 442,940 + SGL_RS03965 0.44 +0.0 443,076 + SGL_RS03965 0.52 +0.5 443,093 - SGL_RS03965 0.52 -0.4 443,198 + SGL_RS03965 0.58 -0.6 443,358 + SGL_RS03965 0.67 +0.7 443,363 + SGL_RS03965 0.68 +0.3 443,371 - SGL_RS03965 0.68 -0.3 443,371 - SGL_RS03965 0.68 -0.1 443,371 - SGL_RS03965 0.68 +0.1 443,525 + SGL_RS03965 0.77 -0.3 443,561 + SGL_RS03965 0.79 +0.1 443,926 - -0.4 443,966 + -3.9 444,013 - -3.9 444,018 - SGL_RS03970 0.10 -3.2 444,072 - SGL_RS03970 0.15 -3.9 444,144 + SGL_RS03970 0.22 -2.4 444,152 - SGL_RS03970 0.23 -2.7 444,161 + SGL_RS03970 0.24 -3.2 444,426 - SGL_RS03970 0.50 -0.4 444,568 + SGL_RS03970 0.63 -3.4 444,623 - SGL_RS03970 0.69 -2.0 444,664 - SGL_RS03970 0.73 -3.0 444,783 - SGL_RS03970 0.84 -2.4 444,899 - -0.4
Or see this region's nucleotide sequence