Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS03940 and SGL_RS03945 are separated by 439 nucleotides SGL_RS03945 and SGL_RS03950 are separated by 13 nucleotides SGL_RS03950 and SGL_RS03955 are separated by 65 nucleotides
SGL_RS03940: SGL_RS03940 - polysaccharide pyruvyl transferase CsaB, at 436,234 to 437,265
_RS03940
SGL_RS03945: SGL_RS03945 - DUF2949 domain-containing protein, at 437,705 to 437,908
_RS03945
SGL_RS03950: SGL_RS03950 - homocysteine biosynthesis protein, at 437,922 to 439,118
_RS03950
SGL_RS03955: SGL_RS03955 - bifunctional oligoribonuclease/PAP phosphatase NrnA, at 439,184 to 440,437
_RS03955
Position (kb) 437
438
439
440 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1 at 437.418 kb on + strand at 437.418 kb on + strand at 437.436 kb on + strand at 437.445 kb on - strand at 438.092 kb on + strand, within SGL_RS03950 at 438.097 kb on + strand, within SGL_RS03950 at 438.109 kb on + strand, within SGL_RS03950 at 438.180 kb on - strand, within SGL_RS03950 at 438.251 kb on - strand, within SGL_RS03950 at 438.304 kb on + strand, within SGL_RS03950 at 438.305 kb on - strand, within SGL_RS03950 at 438.376 kb on - strand, within SGL_RS03950 at 438.620 kb on - strand, within SGL_RS03950 at 438.637 kb on - strand, within SGL_RS03950 at 438.744 kb on - strand, within SGL_RS03950 at 438.790 kb on + strand, within SGL_RS03950 at 438.881 kb on + strand, within SGL_RS03950 at 438.914 kb on - strand, within SGL_RS03950 at 438.971 kb on + strand, within SGL_RS03950 at 439.067 kb on - strand at 439.212 kb on - strand at 439.360 kb on + strand, within SGL_RS03955 at 439.441 kb on + strand, within SGL_RS03955 at 439.474 kb on - strand, within SGL_RS03955 at 439.474 kb on - strand, within SGL_RS03955 at 439.557 kb on - strand, within SGL_RS03955 at 439.562 kb on + strand, within SGL_RS03955 at 439.627 kb on - strand, within SGL_RS03955 at 439.640 kb on - strand, within SGL_RS03955 at 439.658 kb on + strand, within SGL_RS03955 at 439.671 kb on - strand, within SGL_RS03955 at 439.708 kb on - strand, within SGL_RS03955 at 439.780 kb on - strand, within SGL_RS03955 at 439.899 kb on + strand, within SGL_RS03955 at 439.914 kb on - strand, within SGL_RS03955 at 439.919 kb on - strand, within SGL_RS03955 at 439.924 kb on - strand, within SGL_RS03955 at 439.926 kb on + strand, within SGL_RS03955 at 440.091 kb on - strand, within SGL_RS03955
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 437,418 + -3.8 437,418 + -2.1 437,436 + -3.8 437,445 - -2.7 438,092 + SGL_RS03950 0.14 -6.5 438,097 + SGL_RS03950 0.15 -4.3 438,109 + SGL_RS03950 0.16 -4.9 438,180 - SGL_RS03950 0.22 -6.6 438,251 - SGL_RS03950 0.27 -5.9 438,304 + SGL_RS03950 0.32 -6.2 438,305 - SGL_RS03950 0.32 -6.0 438,376 - SGL_RS03950 0.38 -7.2 438,620 - SGL_RS03950 0.58 -5.4 438,637 - SGL_RS03950 0.60 -5.9 438,744 - SGL_RS03950 0.69 -6.4 438,790 + SGL_RS03950 0.73 -6.9 438,881 + SGL_RS03950 0.80 -4.9 438,914 - SGL_RS03950 0.83 -4.7 438,971 + SGL_RS03950 0.88 -4.3 439,067 - -5.0 439,212 - +0.6 439,360 + SGL_RS03955 0.14 +0.3 439,441 + SGL_RS03955 0.20 -0.1 439,474 - SGL_RS03955 0.23 +0.1 439,474 - SGL_RS03955 0.23 +0.3 439,557 - SGL_RS03955 0.30 -0.1 439,562 + SGL_RS03955 0.30 +0.3 439,627 - SGL_RS03955 0.35 -0.2 439,640 - SGL_RS03955 0.36 -0.1 439,658 + SGL_RS03955 0.38 +0.2 439,671 - SGL_RS03955 0.39 +0.5 439,708 - SGL_RS03955 0.42 +0.5 439,780 - SGL_RS03955 0.48 -0.5 439,899 + SGL_RS03955 0.57 +0.6 439,914 - SGL_RS03955 0.58 +0.0 439,919 - SGL_RS03955 0.59 +0.4 439,924 - SGL_RS03955 0.59 +0.0 439,926 + SGL_RS03955 0.59 +0.0 440,091 - SGL_RS03955 0.72 +0.1
Or see this region's nucleotide sequence