Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS03550 and SGL_RS03555 are separated by 18 nucleotides SGL_RS03555 and SGL_RS03560 overlap by 4 nucleotides SGL_RS03560 and SGL_RS03565 are separated by 34 nucleotides SGL_RS03565 and SGL_RS03570 are separated by 50 nucleotides
SGL_RS03550: SGL_RS03550 - CDP-glucose 4,6-dehydratase, at 354,323 to 355,405
_RS03550
SGL_RS03555: SGL_RS03555 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 355,424 to 355,993
_RS03555
SGL_RS03560: SGL_RS03560 - class I SAM-dependent methyltransferase, at 355,990 to 357,210
_RS03560
SGL_RS03565: SGL_RS03565 - DUF29 domain-containing protein, at 357,245 to 357,697
_RS03565
SGL_RS03570: SGL_RS03570 - Uma2 family endonuclease, at 357,748 to 358,608
_RS03570
Position (kb) 355
356
357
358 Strain fitness (log2 ratio) -8
-7
-6
-5
-4
-3
-2
-1
0
1 at 355.078 kb on - strand, within SGL_RS03550 at 355.092 kb on - strand, within SGL_RS03550 at 355.217 kb on + strand, within SGL_RS03550 at 355.308 kb on + strand at 355.375 kb on + strand at 355.382 kb on - strand at 355.584 kb on + strand, within SGL_RS03555 at 355.584 kb on + strand, within SGL_RS03555 at 355.606 kb on - strand, within SGL_RS03555 at 355.740 kb on + strand, within SGL_RS03555 at 355.748 kb on - strand, within SGL_RS03555 at 355.765 kb on - strand, within SGL_RS03555 at 355.789 kb on - strand, within SGL_RS03555 at 355.831 kb on + strand, within SGL_RS03555 at 355.859 kb on - strand, within SGL_RS03555 at 355.909 kb on - strand, within SGL_RS03555 at 355.920 kb on - strand, within SGL_RS03555 at 356.014 kb on - strand at 356.210 kb on + strand, within SGL_RS03560 at 356.211 kb on + strand, within SGL_RS03560 at 356.535 kb on + strand, within SGL_RS03560 at 356.563 kb on - strand, within SGL_RS03560 at 356.676 kb on - strand, within SGL_RS03560 at 356.742 kb on + strand, within SGL_RS03560 at 356.820 kb on - strand, within SGL_RS03560 at 356.949 kb on + strand, within SGL_RS03560 at 356.959 kb on - strand, within SGL_RS03560 at 357.035 kb on - strand, within SGL_RS03560 at 357.433 kb on - strand, within SGL_RS03565 at 357.474 kb on + strand, within SGL_RS03565 at 357.487 kb on - strand, within SGL_RS03565
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 355,078 - SGL_RS03550 0.70 -7.5 355,092 - SGL_RS03550 0.71 -7.0 355,217 + SGL_RS03550 0.83 -7.6 355,308 + -7.5 355,375 + +0.5 355,382 - +0.5 355,584 + SGL_RS03555 0.28 -4.8 355,584 + SGL_RS03555 0.28 -5.4 355,606 - SGL_RS03555 0.32 -5.5 355,740 + SGL_RS03555 0.55 -5.2 355,748 - SGL_RS03555 0.57 -7.2 355,765 - SGL_RS03555 0.60 -4.6 355,789 - SGL_RS03555 0.64 -5.3 355,831 + SGL_RS03555 0.71 -8.2 355,859 - SGL_RS03555 0.76 -5.6 355,909 - SGL_RS03555 0.85 -4.9 355,920 - SGL_RS03555 0.87 -4.9 356,014 - -6.6 356,210 + SGL_RS03560 0.18 -5.9 356,211 + SGL_RS03560 0.18 -5.1 356,535 + SGL_RS03560 0.45 -3.6 356,563 - SGL_RS03560 0.47 -7.2 356,676 - SGL_RS03560 0.56 -6.7 356,742 + SGL_RS03560 0.62 -7.0 356,820 - SGL_RS03560 0.68 -4.1 356,949 + SGL_RS03560 0.79 -7.4 356,959 - SGL_RS03560 0.79 -7.7 357,035 - SGL_RS03560 0.86 -5.8 357,433 - SGL_RS03565 0.42 +0.2 357,474 + SGL_RS03565 0.51 +0.5 357,487 - SGL_RS03565 0.53 +0.7
Or see this region's nucleotide sequence